Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05157 ATGAACTTTCTTTGTGCCAGTGAAAAGATCCAGTGGGCTCAATGCGAAGATTGTCTCAAGTGGCGCAAATTGCCCGCAACTGCACTTCTTCCATCAAAATGGACATGTTCTGATAATTCATGGGATCCAGAAAGATCTTCTTGTTCAGCTGCGCAAGAGCTGACAGCGGAACAGCTTGAAAATTTGCTACCCCCTTGTAATTCAGCTGTTTCCAAAAAAATGAAGGCTGCCAAGCAGGATCCTGACAATGCTGAAGCTTTGGAAGGACTTGATACCCTTGCAAATCTAGCTATTCTGGGAGAAGGTGAGGCACTCCCAGCATCTGCCCAGGCCACAACTAAACACCCCCGTCATAGACCTGGTTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACCTGTAATGTCTGCTTAACAGTGAAGCGTCGTTTCCGGACCCTTATGTTGCGGCGTGAGAAGAAACAATCAGAAAGAGAAGCAGAGACAACACGGAAAAAGCAGCAGCAACAGCATTCTCAGCCATTACCTTCATCTGAAATTTTACTTGATGATGACTCCTTGCCTTGTAGTAACACGGGTGATAGTAGCCCAAACCAGAACAAGGAGAGTAATGATGGTTCTGATGATGATCCTAACCGGATAAAATCGTCTGCTTCACCATTCAAAGGCCAAATTGACCTCAATATTCAGCCAGAGCGAGAAGAAGAATTATCACCCGGTTCAGATTCTGGTGGCATGGTGAAGTTGCTCCATGATGCTACTGATATGTATCTCAAGCAGCAGCCTGTGTTGAACTCTGGTACTGGAGATTTGTCAGGCAGTCAGTCACAGGTGGTAGGAGATGGGTTGAGGGAAGAGAAACTTAGCAATGGTCATGGCAGTAGTAGTCATAGTGCAGATAAGGAACATACCCAATCTTTGTCTATGAATGTGTGA 966 0.4607 MNFLCASEKIQWAQCEDCLKWRKLPATALLPSKWTCSDNSWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDNAEALEGLDTLANLAILGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEREAETTRKKQQQQHSQPLPSSEILLDDDSLPCSNTGDSSPNQNKESNDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGGMVKLLHDATDMYLKQQPVLNSGTGDLSGSQSQVVGDGLREEKLSNGHGSSSHSADKEHTQSLSMNV. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05157 321 Gene3D - 10 63 - -
Seca5g05157 321 ProSiteProfiles Zinc finger CW-type profile. 6 56 IPR011124 GO:0008270
Seca5g05157 321 MobiDBLite consensus disorder prediction 160 176 - -
Seca5g05157 321 MobiDBLite consensus disorder prediction 270 321 - -
Seca5g05157 321 MobiDBLite consensus disorder prediction 270 289 - -
Seca5g05157 321 MobiDBLite consensus disorder prediction 159 257 - -
Seca5g05157 321 Pfam CW-type Zinc Finger 11 53 IPR011124 GO:0008270
Seca5g05157 321 MobiDBLite consensus disorder prediction 177 212 - -
Seca5g05157 321 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 285 - -
Seca5g05157 321 MobiDBLite consensus disorder prediction 295 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05157 Seca-Chr5 108789973 108792579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05157 6 179 B3 DNA Binding Superfamily AT2G30470 51.724 8.58e-49 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05157 K09287 - gmx:100807252 584.719