Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca5g05156 | ATGAACGACCTATTCTCAAGCTCCTTCAAAAAATACAGTGACTTGAAGGAGCAGGTCTACCTTGATGATGTGGAGGCTGGTAAGGAAAGTATCAATCTTGATAAATTCTTTGAAGATGTGGAGAATGTAAAAGAAGACATGAGATCAGTTGAGAAGCTCTATAGAAAATTGCAAGAGGCTAATGAAGAAAGCAAAATTGTCCACAATGCTAAAACCATGAAAGATCTTCGAGCCCGGATGGATAAAGATGTTGAGCAGGTCCTCAAACGTGTTAAAATCATTAAGGGCAAGCTTGAAGCTTTAGAACGTTCCAATGCAGCCAACAGAAACCTTCCAGGGTGTGGTCCAGGTTCTTCAGCAGACCGAACCAGAACTTCAGTGATTAGTGGCTTGGGGAAGAAACTGAAGGACATGATGGATGATTTTCAAGGGTTAAGAGCAAGAATGCAACAAGAGTACAAGGAAACAGTGGAACGCAGGTATTTCACTATAACAGGAGAAAAGGCTGATGAAGAAACTATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGCTTTCTCCAGAGAGCAATTCAAGAACAAGGGAGGGGTCAGATAATGGACACCATATCAGAAATTCAAGAAAGGCATGATGCTGTTAAGGAGATAGAGAAAAACTTAATTGAGCTGCATCAGGTATTTTTGGACATGGCAGCTCTGGTAGAGTCACAGGGTCAACAACTCAACAACATAGAGAGTCATGTGGCACATGCTAGTTCTTTTGTTAGACGAGGCACAGATCAACTTCAAGAAGCCAGAGAGTATCAAAAGAGCTCTAGGAAGTGGTTATGCTATGCCATACTTCTTGGTATTGTCCTCGTTATTGTCCTCCTATTTCCTCTCTTGACATCAATTCTACCCCACTTGTTACGATGA | 915 | 0.412 | MNDLFSSSFKKYSDLKEQVYLDDVEAGKESINLDKFFEDVENVKEDMRSVEKLYRKLQEANEESKIVHNAKTMKDLRARMDKDVEQVLKRVKIIKGKLEALERSNAANRNLPGCGPGSSADRTRTSVISGLGKKLKDMMDDFQGLRARMQQEYKETVERRYFTITGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTDQLQEAREYQKSSRKWLCYAILLGIVLVIVLLFPLLTSILPHLLR. | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca5g05156 | 304 | PANTHER | SYNTAXIN | 41 | 287 | IPR045242 | - | |
| Seca5g05156 | 304 | Coils | Coil | 33 | 70 | - | - | |
| Seca5g05156 | 304 | Coils | Coil | 84 | 104 | - | - | |
| Seca5g05156 | 304 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
| Seca5g05156 | 304 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
| Seca5g05156 | 304 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Seca5g05156 | 304 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
| Seca5g05156 | 304 | Gene3D | - | 33 | 160 | - | - | |
| Seca5g05156 | 304 | FunFam | Syntaxin 132 | 196 | 296 | - | - | |
| Seca5g05156 | 304 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 30 | 160 | - | - | |
| Seca5g05156 | 304 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
| Seca5g05156 | 304 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
| Seca5g05156 | 304 | Gene3D | - | 194 | 295 | - | - | |
| Seca5g05156 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Seca5g05156 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Seca5g05156 | 304 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca5g05156 | Seca-Chr5 | 108787409 | 108788323 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca5g05156 | 1 | 303 | SNARE and Associated Proteins | AT1G61290 | 79.208 | 0.0 | 504 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca5g05156 | K08486 | - | gmx:100818999 | 546.584 |