Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05141 ATGTGGACGGTGATGGGGACGAAGGTGATGGGGAGGTGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCGTTCTCCGCCATGGGACCCGAAACTGGAATGTTGTCGCCGCCGAGCTCCGAGCCCGAACCCTTTCTCCTTACACTTACACCCCTGAGGTCTGTAAAGCCAAGTATGAAGACTTGCAACGGCGGTATTCTGGGAGTAAGGCTTGGTTTGAGGAGCTTAGGAAAAGAAGAGTAGAAGAGCTGAAGAGAGCTCTAGAGCTATCTGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAACTCCTCAAGGCTGGGAAGAATGAGAAAAGAGATTATTGTCATCTTGACAATGGCTCAGGAAGTCCAGAATCACATGTACCTTCACAAAAATTGGAAAGAGTTGAATCTTCCACTAAAGAGACATCAAAGGATGGGCTATCTGCTGGTAGTTTCACACACGAAACCAGGACAAACTGGTCTCCTGATTGCCAGGTTCCAGCTGGGTCTGCTGGAGATTTGGAGACTAAGCCTGAAGTTTCACACTCTACTGATAAGGTTAAGGTTTTGAGTGTAGATAAGTTAGCATATACTATATATGAAGGACACGGAAGAAGTTTTAAAAAACGGAGAGGGCAGAGGAAGAGGAAGGATTGTAGCAGAAATATTAAGGAAGCAAGTGTTGGAGAAAGTGACTTAATAGATTCAACTGATGTTGTGTCCTTGTGTAAAGAAAGTTCTACCAGCAACTGTGGTGAAGTTGCCAAATCTTCAGGTGTAGATGATCAAAATAGGAACTTTAAAAAGACAGGGCCAGAAGACATGAAGGAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCATCTGCCTTCCGCCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATTCGGAGGCACATGGACTTTGACACTATAAGATCAAGAATTAGCAACCAAACAATTAAGTCAGCTATAGAGCTTTTCCGAGACTTGCTTCTACTCACTAACAATGCTTTAGTCTTCTACTCCAAGAGCACTCGTGAGTATAAATCTGCTCTATTGCTGAGAGACCTTGTCACCAAAAAAATGAGGGAGAGTTTAAAGGGTATTAGCAGAAAAGTCCCAGAGGCTAATGTGCCTATTAAGTTACCTGTACAAATGCAAAATCCTCATGTGAAACCAAGAAGTGTACGCCCAGGTAACAGAAAAATTGTTGCAAAAGCAGTTGGTGGCAGCAACAACTCTGCATCTGGGGTGTCACATGCAGCTAGAAAACCCACTAAAGTTGATTCCCCATCTTCAGTAGAATCCTTAACTGTCAAGAAGAAAGCTTTTGGTCGACCAAAAAAGGTTGGACGTGGGACTGCAGCTCAAAAGCCTTCAACAACACCGTTGAAGGGAAAGAAAAGAGTTAGAACAAAGTGA 1443 0.438 MWTVMGTKVMGRWGTWEELLLGGAVLRHGTRNWNVVAAELRARTLSPYTYTPEVCKAKYEDLQRRYSGSKAWFEELRKRRVEELKRALELSEDSIGSLESKLELLKAGKNEKRDYCHLDNGSGSPESHVPSQKLERVESSTKETSKDGLSAGSFTHETRTNWSPDCQVPAGSAGDLETKPEVSHSTDKVKVLSVDKLAYTIYEGHGRSFKKRRGQRKRKDCSRNIKEASVGESDLIDSTDVVSLCKESSTSNCGEVAKSSGVDDQNRNFKKTGPEDMKEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISNQTIKSAIELFRDLLLLTNNALVFYSKSTREYKSALLLRDLVTKKMRESLKGISRKVPEANVPIKLPVQMQNPHVKPRSVRPGNRKIVAKAVGGSNNSASGVSHAARKPTKVDSPSSVESLTVKKKAFGRPKKVGRGTAAQKPSTTPLKGKKRVRTK. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05141 480 Coils Coil 81 101 - -
Seca5g05141 480 CDD Bromodomain 275 369 - -
Seca5g05141 480 SMART bromo_6 270 374 IPR001487 GO:0005515
Seca5g05141 480 SUPERFAMILY Bromodomain 276 374 IPR036427 GO:0005515
Seca5g05141 480 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 7 438 - -
Seca5g05141 480 MobiDBLite consensus disorder prediction 115 182 - -
Seca5g05141 480 Gene3D - 264 376 IPR036427 GO:0005515
Seca5g05141 480 CDD SANT 12 59 IPR001005 -
Seca5g05141 480 MobiDBLite consensus disorder prediction 144 167 - -
Seca5g05141 480 ProSiteProfiles Bromodomain profile. 285 355 IPR001487 GO:0005515
Seca5g05141 480 Pfam Bromodomain 277 358 IPR001487 GO:0005515
Seca5g05141 480 MobiDBLite consensus disorder prediction 415 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05141 Seca-Chr5 108673382 108677087 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca5g05141 Bromodomain 4.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05141 - - gmx:100804245 751.895