Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05139 ATGGGTTATACGAATTCGGAGTTGCATGTGCGAATCTTTGTCACCTCCTTGGTGATTCTAACGGGGACTTTCTGTGCTGGAGACACTGACCTGGTTGATGTTGCAGCAATCAATAGTCTCTATGTTGCTCTGGGCTCACCACCTCTTCAAGGGTGGAAGCCCGTGGGAGGAGATCCTTGTTTGGAACAGTGGCAAGGCGTGGCTTGTGTCTTCTCCAACATAACTGCCATACAGCTTGCTGACATGAATTTGGGTGGACAGCTGGGCACTAATTTGAATTTCCCTTCCATTATAGAAATTGATCTTAGCAACAACCATATTGGAGGGGCTATTCCATTCACTTTGCCTCCTACGATGAGGAGCTTGTCTCTTGCAGGAAATCAGTTAAATGGAAGCATTCCAGATGCCTTATCCTTATTAACCCAATTGTCAAACTTGGATTTGTCAAATAACAACTTGAGTGGCCAGTTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACACTACAATTGCAGAACAATCAACTTTCTGGGACCCTCTATGTTTTGCAGGACCTTCCTCTTCAGGATCTGAATATAGAGAATAATTTATTCTCTGGACCAATTCCTCCAAAATTGTTGACTATCCCGAATTTCAGAAAAGATGGGAATCCATTTAATACAACTATTATTCCATCACCTCCGGCTGCAGCCCCTTCACCTGTAGCAATGGCTCCATCCCCTGAGGAATCACCTTGGAAAGTGGCAAATGGTCCTTCTGCCCTGGCAGCATTGATACCTGCAAATACTGGGAAATCTTTCATAGCTAAGAATGTCATTTGGATTGCTGGTGCAGGTTTCTTAATATTCATTGCATTGGGAATTTGTCTTTTTATGTTTTGGTGCTTTAAGAGAAGGCCGGAAAAGAAAAATGCTAAGAAACCTGATGTAGGTGTTTGTGCGAAACCTTTGCATAAACCTACATGCAGTGACACTGTTTTTGAAGCAACTAATGAAGAGGAAAAAGGACACGGTTCCAAACTTGCCCCCCTGCAGCCACCACCATGTTCTCTCCCACCCATTCCTAGTGAGAAGGTCATCATCAATCCGGCTATAACTTCCAAAGTAACTGAAAAACAAGTTGTGACAAGTTCTGTCAAAGTTTACACTGTTGCATCACTTCAGCAGTATACAAGTAGTTTTTCCCAAGAAAATTGTATTGGGGAAGGCACGCTTGGGCCTGTTTATAGGGCTGAGCTCCCTGATGGACAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCGTCCATGGGACATAATCATGAACAATTTCTTCAATTGGTATCCAGCATCTCAAAAATTCAGCATGCTAATATTGCAAAGCTTGTGGGCTACTGTGCTGAGTATAGCCAACGACTGCTTGTATACGAGTATTGCAGTAACGGGACTCTACATGATGCACTGCATGGGCATGATGAACACCGTATTGAACTTCCATGGAATGCACGCATTAAGGTGGCACTTGGAGCTGCAAGAGCTTTAGAGTATCTGCATGAGAACTTTCGGCCACCGATTGTGCATCGAAATTTTAGGTCTGCTAATGTTCTCCTAAATGAAAAGTTGGAAGTGCATGTCTCTGATTGTGGATTGGGTCCTTTACTATCTTCTGGCTCTGCTGGTCAGTTATCAGGGCGCCTCCTTACAGCTTATGGTTACAGTGCTCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGAGTTGTAATGCTAGAACTCCTCACTGGAAGAAAATCCTATGACAGGTGCATTAGTAATTAA 1818 0.4356 MGYTNSELHVRIFVTSLVILTGTFCAGDTDLVDVAAINSLYVALGSPPLQGWKPVGGDPCLEQWQGVACVFSNITAIQLADMNLGGQLGTNLNFPSIIEIDLSNNHIGGAIPFTLPPTMRSLSLAGNQLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLQLQNNQLSGTLYVLQDLPLQDLNIENNLFSGPIPPKLLTIPNFRKDGNPFNTTIIPSPPAAAPSPVAMAPSPEESPWKVANGPSALAALIPANTGKSFIAKNVIWIAGAGFLIFIALGICLFMFWCFKRRPEKKNAKKPDVGVCAKPLHKPTCSDTVFEATNEEEKGHGSKLAPLQPPPCSLPPIPSEKVIINPAITSKVTEKQVVTSSVKVYTVASLQQYTSSFSQENCIGEGTLGPVYRAELPDGQLLAVRKLDATASMGHNHEQFLQLVSSISKIQHANIAKLVGYCAEYSQRLLVYEYCSNGTLHDALHGHDEHRIELPWNARIKVALGAARALEYLHENFRPPIVHRNFRSANVLLNEKLEVHVSDCGLGPLLSSGSAGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSYDRCISN. 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05139 605 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 363 472 - -
Seca5g05139 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 142 - -
Seca5g05139 605 PRINTS Leucine-rich repeat signature 143 156 - -
Seca5g05139 605 PRINTS Leucine-rich repeat signature 164 177 - -
Seca5g05139 605 SUPERFAMILY Protein kinase-like (PK-like) 374 600 IPR011009 -
Seca5g05139 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 143 231 - -
Seca5g05139 605 Gene3D Ribonuclease Inhibitor 35 228 IPR032675 -
Seca5g05139 605 Gene3D Transferase(Phosphotransferase) domain 1 473 604 - -
Seca5g05139 605 ProSiteProfiles Protein kinase domain profile. 395 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05139 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 473 605 - -
Seca5g05139 605 Gene3D Phosphorylase Kinase; domain 1 359 472 - -
Seca5g05139 605 Pfam Protein tyrosine and serine/threonine kinase 398 602 IPR001245 GO:0004672|GO:0006468
Seca5g05139 605 SUPERFAMILY L domain-like 34 211 - -
Seca5g05139 605 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 22 600 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05139 Seca-Chr5 108648436 108654374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05139 33 601 Strubbelig Receptor Gene Family AT4G03390 49.467 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca5g05139 PK_Tyr_Ser-Thr 9.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05139 - - gmx:100793423 873.233