Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05134 ATGATGGCGGATGAGGGATTCGACTTCCAATTGGTGGACAACGGGGACGCCGCCGATGACGATAAGCTCTTCATGGATATCGATTCCATTCTCAGCGTTCTTGATGAAGATCGCGATCCTTCTGAGAGTAGTCATGAGGATTCTTCATTGAAAGATGTTTCACCTAGCGAATCTGGCATCCTTGATAATTTTCTACTTCAAAATGATTCTGGAACTAGGGGCTCAAATCGCTCAATTTGTTTAACTGATTCTGCAGGGAATTATGTGCTTGACTGTGAACATGAAAACCAGGTACCTTCATCACAGACTTGCTCTTCCCCAAATGCTTTTGCCGGTGGTTACAGAGGCTCTTTCTCTGTGGTTGAAAGTGATGACATTTGTCACACAGAAAGGACAGGAGTTTCTAAATGTGAGATACCTACTTACAGTGTGGACACGAATATCCCTGAGGCAAATTCAAACGTTGAAGTTGTTTGTGGAAATAATTTGAATCTGAGTCTGTGGAAGGGTGTAAATGATAGCCAAGTCAAGCATGTAGGAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCATTGAGAATGTTGATGTAACTCTTGAAGATTATGGAACATTTTCGAAAGACGGTGTTGTAGTTTCTGGGAAGCAGGAAAATGACTCGTGTACATCATTTGAAATGTCGTTTGTGGATGCTGACAGAGCAACACATGTTGCAACTTCAACTGATTCTACTATTTGTCAAGGTTCCAATGTTCCAAGTGATTTTAGTGACTACTATTCATCTTTGAATTGTTACCAGAGTATTGATGATAGATTTGATGTTCCCAACACTTCTGGTTATTTTCCTAATGGTGTTTGTCCTCAATTCTGGAAAAATGAAGAGATGACAGGGAACATGAATGTTGCAAGGGAGTTCTTTGCTGATACAGCACGTGTGAGTAGTGGCCTGCATTCCAGCACTACTGGTGGAATATCTTTTCAAGATGGTCAATTTTTGTTAGCAGATAGTGAACATCCTTCATTTTTTCCTGGTAATGTTCTGTTTGAAGACAGTGCATCAGTAAAACTTTCAACTTGTGCTTCATATATTTCAAGTGAAAGCCCATCAGTTCATGTCAATGCTGAAAATAATGACCTGATTATGCCTTACCAAGATTCTTTTCACAGTGATGATGCTGAGTTAAAGGCAGGTCAAGAGGTGAAACAATTTGCTGGTATTTCCCCTACTATTAGATGCCAGGGTTATGATTTTTTCAAGCACCAGGATAGTGGTACAATTGTAACAGCCAGGAAAGTGAATTATTACCAAGATATTATGGATGAAACTGCTAATGAATTTCCACGAAACATTGGAAGCTTGAATTTGAAGTCCTTAGACTTGTCTATTGCCCGAGCATCAGTTCCCAGTGGGAAGCAGTATAATTGTGTTACAAGGGAAGGGGAGGATAAAACCATTGAACATAAAAATATTGATACTCAACTTTCAAGAAGAAGTATTGAGAGATCCAATATTGAGGATGACTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATCAGTCGATGTGCAGAACTTGGGAATTCCCTTAGTGGGTCACAATCTTCTAGATCTGGTTATACCCAACCTTATATGTTGGGAGGCACAAGATCGAAGGCGCGTGATGAGCAATACATTTTACGAGTTGCGTTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGATGGACTGCTAGCAGTTCCACTTTTACGACATCAGAGAATCGCTTTATCGTGGATGGTTCAGAAGGAAACATCAAGTCTATATTGCTCAGGGGGTATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTTAAGACATGCAGCAATGCACAAAAAAGTGAATTAGAAACTTTAAATTTGGATGCAGATGATGACCTGATTCCTGAAAATAGTATAGTGAAGAAGGAATCTAATATGTGTCAGGATACATCTAGTAGAAATCCAGTCACAAGCATGAGTTTATTGGTGCATGGGAAAGGAAGGCCATCTGCGGGAACACTTATTGTTTGTCCGACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCATAATAAAGTGACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACTAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACAACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAACCTCTGGTTGACAAAGATGATGAAGAAAAAGGAATTTATGAAGATCATGCTGTAGCAAGTAGGAAAAGGAAATGCCCTCCTAGTTCTAGTAGGAGTGGCAAGAAGGGATTGCACAGCACAATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTCTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAACGTAGATGGTGTTTATCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAACAGAAATCCATCAAAGGGGTATAGAAAGCTACAGGCTGTCTTAAAGACGATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGTGAACCTATTATTTCCTTGCCACCTAAGTTTGTAGAGTTGAAAAAAGTAGATTTTTCACAGGAGGAACGTGATTTCTATTCAAGACTTGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTCAACATTTTGTTAATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTTTGGAAATCTTCGGTTGAAATGGCCAAGAAGCTTCCTCAGGAACAACAATTATGTCTTCTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTCGTATCAGTCTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAGAACACGACTAAGCATGTCTTCTGTGTTTTCCAAAGCTACATTGAACTGTTCTTTATCTGACCAGGCTTGTGATCATTTGCCTGGGTGCTCCGGTTCTGAGATGGAGGAATCTGAGCCTTGTTCTCAGACTCAGCCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGCCACAATTCTGAAAAAAATTGTGTACAGAGCACTTTTGGAGAAAGTAGTACTGATTGCCTTGGGAGCTCCTCTTGTCCAGACAATGGGAAATCCTGGAATGATTTTCCTGAGCATCAAAATGTGTTTATAGAGAGAAGCTCTAATGGTTCAGTTGGTTCTGTAGGGGAGAAAGCCATAGTGTTTTCTCAGTGGACGAGGATGCTGGATTTGCTTGAAGCATGTCTTAAGAAATCTTCAATTCAATATAGAAGACTTGATGGAACAATGTCAGTCATTGCTAGAGATAAAGCTGTTAAAGATTTTAATACACTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCTTGCCATGTTCTAATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCGCATCGAATTGGTCAGACTCGTCCTGTTACAGTTTTGCGGTTAACTGTGAGAGATACGGTTGAAGACCGAATTTTAGCTCTGCAGCAAAGGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGCCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4035 0.4107 MMADEGFDFQLVDNGDAADDDKLFMDIDSILSVLDEDRDPSESSHEDSSLKDVSPSESGILDNFLLQNDSGTRGSNRSICLTDSAGNYVLDCEHENQVPSSQTCSSPNAFAGGYRGSFSVVESDDICHTERTGVSKCEIPTYSVDTNIPEANSNVEVVCGNNLNLSLWKGVNDSQVKHVGDDVESEYASHSSIIENVDVTLEDYGTFSKDGVVVSGKQENDSCTSFEMSFVDADRATHVATSTDSTICQGSNVPSDFSDYYSSLNCYQSIDDRFDVPNTSGYFPNGVCPQFWKNEEMTGNMNVAREFFADTARVSSGLHSSTTGGISFQDGQFLLADSEHPSFFPGNVLFEDSASVKLSTCASYISSESPSVHVNAENNDLIMPYQDSFHSDDAELKAGQEVKQFAGISPTIRCQGYDFFKHQDSGTIVTARKVNYYQDIMDETANEFPRNIGSLNLKSLDLSIARASVPSGKQYNCVTREGEDKTIEHKNIDTQLSRRSIERSNIEDDSDVCIIEDISHPAPISRCAELGNSLSGSQSSRSGYTQPYMLGGTRSKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCSNAQKSELETLNLDADDDLIPENSIVKKESNMCQDTSSRNPVTSMSLLVHGKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGIYEDHAVASRKRKCPPSSSRSGKKGLHSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEQQLCLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPTTNCRTRLSMSSVFSKATLNCSLSDQACDHLPGCSGSEMEESEPCSQTQPCDSSKIKAALEVLQSLSKPQCHNSEKNCVQSTFGESSTDCLGSSSCPDNGKSWNDFPEHQNVFIERSSNGSVGSVGEKAIVFSQWTRMLDLLEACLKKSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQRKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM. 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05134 1344 CDD SF2_C_SNF 1189 1296 - -
Seca5g05134 1344 Pfam Helicase conserved C-terminal domain 1188 1286 IPR001650 -
Seca5g05134 1344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 873 IPR014001 -
Seca5g05134 1344 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 413 1343 - -
Seca5g05134 1344 Pfam Zinc finger, C3HC4 type (RING finger) 1027 1064 IPR018957 GO:0046872
Seca5g05134 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 911 IPR027417 -
Seca5g05134 1344 Gene3D - 798 912 IPR038718 -
Seca5g05134 1344 Gene3D - 683 789 IPR038718 -
Seca5g05134 1344 SMART ring_2 1027 1065 IPR001841 -
Seca5g05134 1344 ProSitePatterns Zinc finger RING-type signature. 1042 1051 IPR017907 -
Seca5g05134 1344 Gene3D - 1181 1339 IPR027417 -
Seca5g05134 1344 MobiDBLite consensus disorder prediction 35 52 - -
Seca5g05134 1344 MobiDBLite consensus disorder prediction 35 56 - -
Seca5g05134 1344 Gene3D - 559 653 IPR038718 -
Seca5g05134 1344 CDD DEXDc_SHPRH-like 589 911 - -
Seca5g05134 1344 SMART ultradead3 585 888 IPR014001 -
Seca5g05134 1344 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 682 770 - -
Seca5g05134 1344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1020 1078 IPR013083 -
Seca5g05134 1344 Pfam SNF2-related domain 609 988 IPR000330 GO:0005524|GO:0140658
Seca5g05134 1344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1180 1339 IPR001650 -
Seca5g05134 1344 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 793 923 - -
Seca5g05134 1344 ProSiteProfiles Zinc finger RING-type profile. 1027 1066 IPR001841 -
Seca5g05134 1344 SMART helicmild6 1203 1286 IPR001650 -
Seca5g05134 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 919 1343 IPR027417 -
Seca5g05134 1344 SUPERFAMILY RING/U-box 1024 1076 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05134 Seca-Chr5 108595626 108604139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05134 480 1343 RAD5 or RAD16-like Gene Family AT1G61140 61.400 0.0 989
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca5g05134 SNF2_N 9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05134 - - gmx:100805307 1895.94