Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05132 ATGACAAGTTTCTACACTTTGATCACTTTGTTACTGTTTTTATCCTTGAAGCCTCTTGTTTGTTCTAGAGATAGGCAATGGGGTGGTGGGAGAATATTGAGCTCTGGGGATAATGGTGATCTTGTGACTAACTTGCCTAGCCAGCCTCCTGCTGATTTCCAGCACTATGCTGGATATGTCACAGTCAATGAGACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCTGAAGAGAAACCATTGGTGCTGTGGCTTAATGGAGATATGTTCTCTGCAAAGGTGACAAGGTGCTTTTTTGTCACAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACACCGATGGCAAGGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATGCAACCACTGAATATGCACACCTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTACACAATTGGTTTCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGTTACGCAGGAAAGTATGTACCGGAACTGGCTGAACTCATACTTGATAGGAACAAAGACCCTTCCCTTCATATTGATCTCAAGGGCATTTTGGTATGGTCCTACAAATTTTTAAAAGAATATACCCCTTGTATCATCCTTTTATTTATATTTTGGGTTTTTTTGCAGCTGGGCAACCCTGAAACTTCTGATGCTGAGGATTGGCAAGGTCTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTTACAAAACAATCAGGAGAAGCTGTGACTTTAACAGCAGTGATCCATGGAGTAATAAAGATTGTGGTGATGGAGTTGATGAAGTGCTCAAACAGTACAATGAAATTGACATCTACAGCCTCTACACCTCTGTCTGCTTTGCCAGTACAGCGCGTTCTAATGATCAACCAATGCGGATGGTGATGAAGCGCTCATCTAATATGCCATGTCTGGATGACTATGCTAAAGCTTTTTATAACAGACCAGATGTTCAGAAGGCCCTTCATGCCAGTGATGGTCACAATTTGAGGAATTGGAGTATTTGCAACAATGATATATTCAACCACTGGAAACAATCAAAGCGTTCTGTTATCCCAATTTACAAGAAGCTTATATCAGCAGGACTTAGGATTTGGCTTTACAGTGGAGACACTGATGGTAGAGTGCCAGTGCTGTCAACAAGATACAGCTTAAGTGTTCTTGGTTTGCCTATCAGCAAGCCATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGGCTTACATTTGCGACATTTCGAGGAGCTGGCCATGCAGTGCCTTGTTTTAAACCAAGCAACTCACTGGCATTTTTCTCCTCTTTTCTTCAAGGAGAATCACCACCTTCTACAAGATGA 1515 0.4238 MTSFYTLITLLLFLSLKPLVCSRDRQWGGGRILSSGDNGDLVTNLPSQPPADFQHYAGYVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGDMFSAKVTRCFFVTGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNATTEYAHLGDDFTANDAYTFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELILDRNKDPSLHIDLKGILVWSYKFLKEYTPCIILLFIFWVFLQLGNPETSDAEDWQGLVDYAWSHAVISDETYKTIRRSCDFNSSDPWSNKDCGDGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQPMRMVMKRSSNMPCLDDYAKAFYNRPDVQKALHASDGHNLRNWSICNNDIFNHWKQSKRSVIPIYKKLISAGLRIWLYSGDTDGRVPVLSTRYSLSVLGLPISKPWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLQGESPPSTR. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05132 504 Gene3D - 403 497 - -
Seca5g05132 504 Gene3D - 356 394 - -
Seca5g05132 504 Gene3D alpha/beta hydrolase 37 334 IPR029058 -
Seca5g05132 504 Pfam Serine carboxypeptidase 49 234 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 Pfam Serine carboxypeptidase 259 497 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 ProSitePatterns Serine carboxypeptidases, serine active site. 199 206 IPR018202 GO:0004185
Seca5g05132 504 SUPERFAMILY alpha/beta-Hydrolases 38 498 IPR029058 -
Seca5g05132 504 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 42 484 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 FunFam Carboxypeptidase 36 256 - -
Seca5g05132 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 185 210 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 149 159 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 148 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 PRINTS Carboxypeptidase C serine protease (S10) family signature 467 480 IPR001563 GO:0004185|GO:0006508
Seca5g05132 504 FunFam Carboxypeptidase 403 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05132 Seca-Chr5 108511800 108515167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05132 361 498 Calmodulin-binding Proteins AT2G22960 33.094 7.44e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05132 K16297 - gmx:100819700 819.69