Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05130 ATGTTTAGCATGGATTCATCTTCTGTCTCTCACTGTCAGCACCCGCAGCTCCCACCAGGGTTTCGCTTCCACCCCACAGATGAGGAACTGGTAGTTCACTACCTCAAGAGAAAAGCAGACTCTGCTCCTCTTCCTGTTTCCATCATAGCAGAGATTGATCTCTACAAGTTCGACCCATGGGAACTCCCAAGTAAGGCAAGTTTTGGTGAGCAAGAATGGTACTTTTTCAGTCCAAGAGATAGGAAATACCCAAATGGAGCGAGGCCTAACAGGGCTGCTACTTCTGGCTATTGGAAAGCTACTGGAACTGACAAGCCTATACTAGCATCTGATGGCCACCACAAAGTTGGGGTCAAGAAAGCCCTTGTTTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACTAACTGGATTATGCATGAGTATAGACTTGCAGATAATAAGTCCTTCAATTCTACCTCAAAGACACCTTCTCTGGCTCCTGATCCTGCACGTAGTAACAAGAAGAACTCTTTGCGGCTTGACGATTGGGTTTTATGCCGAATATACAAGAAAAGCAATAGTAGCACCCAGCCAAGGCTACCTTTGATGGAGCAGGACAATAAGGAGCTTTCTTCAGAGAGTATGCTACCAATGATGTCATCAACTCTGTCAATGGCTAATACGTATCAGAATTCCAAACCCACATGTTCGAGAAGTGCAAGTTATGGACCACTGGGAGATGACAACTTGTTCAATGGAATCATAGCAGCTGATCAGAGCATGCAAAATGGTGGTTCTGATTCCTACCATCAAGTCTCCAAGGGAAACTTGCCTATGAAAAGAGCAATACCGTCACAATATTGGAATATGGACACAGCAGGGTCTCCATCTCCAGGGTCATCTTCTTCAAGCAGGCAATTCCATTGTGATCTTAATAATGGAAGCAGCAACGCCACAATTGAGGAAAACAATTCCTTTATTTCTCTGCTAAACCACCTTCCACACACCTCAACTTTTCACCCAAATGCCCTTCTTGGTCATGATGATGATGGTGTCTTGAGGCAACAGTTTCAACTCCCAAGCATAAATTGGAACACTTAG 1083 0.446 MFSMDSSSVSHCQHPQLPPGFRFHPTDEELVVHYLKRKADSAPLPVSIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASDGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADNKSFNSTSKTPSLAPDPARSNKKNSLRLDDWVLCRIYKKSNSSTQPRLPLMEQDNKELSSESMLPMMSSTLSMANTYQNSKPTCSRSASYGPLGDDNLFNGIIAADQSMQNGGSDSYHQVSKGNLPMKRAIPSQYWNMDTAGSPSPGSSSSSRQFHCDLNNGSSNATIEENNSFISLLNHLPHTSTFHPNALLGHDDDGVLRQQFQLPSINWNT. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05130 360 MobiDBLite consensus disorder prediction 285 309 - -
Seca5g05130 360 SUPERFAMILY NAC domain 11 185 IPR036093 GO:0003677|GO:0006355
Seca5g05130 360 PANTHER NAC TRANSCRIPTION FACTOR 56 17 218 - -
Seca5g05130 360 FunFam NAC transcription factor 56 26 190 - -
Seca5g05130 360 MobiDBLite consensus disorder prediction 149 168 - -
Seca5g05130 360 Gene3D NAC domain 26 190 IPR036093 GO:0003677|GO:0006355
Seca5g05130 360 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
Seca5g05130 360 ProSiteProfiles NAC domain profile. 17 185 IPR003441 GO:0003677|GO:0006355
Seca5g05130 360 MobiDBLite consensus disorder prediction 149 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05130 Seca-Chr5 108480721 108483083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05130 1 360 NAC Transcription Factor Family AT1G61110 52.575 2.65e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g05130 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05130 - - gmx:100792372 519.62