Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05118 ATGAGTTGTGGCTGCTTTGGACCCTCATCCATAAAGAAGGAAAGGCGTCCTTCTCATATTTCCAATGAAATTGATGGCTATCCTCTAGATAATGTTAGCCATTTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCATGCAAGCAACAAGATAGGACGGGGAGGTTTTGGAACTGTTTACCAGGGAACCTTTAGAGATGGAAGACGGGTAGCAGTGAAGACCCTTTCAGTTGGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATATTAAACATCCATACCTTGTTGAATTGATTGGATACTGCATTCAAGGACCTAATCGTGCATTAGTCTACGAACATGTAGAAAATGGCAGCCTTCATAGTGCATTACTTGGCTCAAAGAGTATAAACATCAAACTAGACTGGAAAAAGAGATCTGCTATTTGCATCGGTACTGCAAAGGGTCTTGCATATCTTCATGAAGGACTAGTGCCACATATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGACTTTAATCCTAAAATAGGTGATTTTGGGATGGCTAAATTATTTCCAGATGACATCACTCACATTAGTACAAGAATTGCTGGAACAACTGGTTACTTAGCACCGGAATATGCATTGGGTGGCCAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCGCTAGGACAAGCTGGGGAGGGTCACATAAATTCCTCTTGGAATGGGCGTGGCAACTTCATGAAGAGGGGAAATTGTTGGAGCTTGTAGATCCAGACATGAAAGAATTTCCTGACAAAGAGATAATTAAGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCTGCAAGCAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTCTCCAAGGAAATCCAGCTCAATGAGAAGCAACTTACTGCGCCAGGATTCTTCATTGATGCAGGAGAATCCTCTCAAAAGAAGTCACAGTCTGACTTCTCAAGCTTTACTCATGTTAGTATTACTCAGGTCACCGCACGGTGA 1092 0.413 MSCGCFGPSSIKKERRPSHISNEIDGYPLDNVSHFSDKELRLATDNYHASNKIGRGGFGTVYQGTFRDGRRVAVKTLSVGSKQGVREFLTEIKTLSNIKHPYLVELIGYCIQGPNRALVYEHVENGSLHSALLGSKSINIKLDWKKRSAICIGTAKGLAYLHEGLVPHIVHRDIKASNVLLDRDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSARTSWGGSHKFLLEWAWQLHEEGKLLELVDPDMKEFPDKEIIKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNEKQLTAPGFFIDAGESSQKKSQSDFSSFTHVSITQVTAR. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05118 363 CDD STKc_IRAK 53 319 - -
Seca5g05118 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca5g05118 363 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g05118 363 Pfam Protein tyrosine and serine/threonine kinase 49 317 IPR001245 GO:0004672|GO:0006468
Seca5g05118 363 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Seca5g05118 363 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Seca5g05118 363 SMART serkin_6 47 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05118 363 FunFam receptor-like protein kinase FERONIA 10 122 - -
Seca5g05118 363 PIRSF ILK 10 329 - -
Seca5g05118 363 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca5g05118 363 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05118 363 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 348 - -
Seca5g05118 363 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Seca5g05118 363 SUPERFAMILY Protein kinase-like (PK-like) 31 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05118 Seca-Chr5 108359186 108363549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05118 11 352 Receptor kinase-like Gene Family AT1G56120 47.368 1.49e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g05118 PK_Tyr_Ser-Thr 8.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05118 - - mtr:11430773 589.726