Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g05118 | ATGAGTTGTGGCTGCTTTGGACCCTCATCCATAAAGAAGGAAAGGCGTCCTTCTCATATTTCCAATGAAATTGATGGCTATCCTCTAGATAATGTTAGCCATTTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCATGCAAGCAACAAGATAGGACGGGGAGGTTTTGGAACTGTTTACCAGGGAACCTTTAGAGATGGAAGACGGGTAGCAGTGAAGACCCTTTCAGTTGGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATATTAAACATCCATACCTTGTTGAATTGATTGGATACTGCATTCAAGGACCTAATCGTGCATTAGTCTACGAACATGTAGAAAATGGCAGCCTTCATAGTGCATTACTTGGCTCAAAGAGTATAAACATCAAACTAGACTGGAAAAAGAGATCTGCTATTTGCATCGGTACTGCAAAGGGTCTTGCATATCTTCATGAAGGACTAGTGCCACATATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGACTTTAATCCTAAAATAGGTGATTTTGGGATGGCTAAATTATTTCCAGATGACATCACTCACATTAGTACAAGAATTGCTGGAACAACTGGTTACTTAGCACCGGAATATGCATTGGGTGGCCAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCGCTAGGACAAGCTGGGGAGGGTCACATAAATTCCTCTTGGAATGGGCGTGGCAACTTCATGAAGAGGGGAAATTGTTGGAGCTTGTAGATCCAGACATGAAAGAATTTCCTGACAAAGAGATAATTAAGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCTGCAAGCAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTCTCCAAGGAAATCCAGCTCAATGAGAAGCAACTTACTGCGCCAGGATTCTTCATTGATGCAGGAGAATCCTCTCAAAAGAAGTCACAGTCTGACTTCTCAAGCTTTACTCATGTTAGTATTACTCAGGTCACCGCACGGTGA | 1092 | 0.413 | MSCGCFGPSSIKKERRPSHISNEIDGYPLDNVSHFSDKELRLATDNYHASNKIGRGGFGTVYQGTFRDGRRVAVKTLSVGSKQGVREFLTEIKTLSNIKHPYLVELIGYCIQGPNRALVYEHVENGSLHSALLGSKSINIKLDWKKRSAICIGTAKGLAYLHEGLVPHIVHRDIKASNVLLDRDFNPKIGDFGMAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSARTSWGGSHKFLLEWAWQLHEEGKLLELVDPDMKEFPDKEIIKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNEKQLTAPGFFIDAGESSQKKSQSDFSSFTHVSITQVTAR. | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g05118 | 363 | CDD | STKc_IRAK | 53 | 319 | - | - | |
Seca5g05118 | 363 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 169 | 181 | IPR008271 | GO:0004672|GO:0006468 | |
Seca5g05118 | 363 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Seca5g05118 | 363 | Pfam | Protein tyrosine and serine/threonine kinase | 49 | 317 | IPR001245 | GO:0004672|GO:0006468 | |
Seca5g05118 | 363 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 123 | 329 | - | - | |
Seca5g05118 | 363 | Gene3D | Transferase(Phosphotransferase) domain 1 | 123 | 332 | - | - | |
Seca5g05118 | 363 | SMART | serkin_6 | 47 | 334 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g05118 | 363 | FunFam | receptor-like protein kinase FERONIA | 10 | 122 | - | - | |
Seca5g05118 | 363 | PIRSF | ILK | 10 | 329 | - | - | |
Seca5g05118 | 363 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 75 | IPR017441 | GO:0005524 | |
Seca5g05118 | 363 | ProSiteProfiles | Protein kinase domain profile. | 47 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g05118 | 363 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 31 | 348 | - | - | |
Seca5g05118 | 363 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 122 | - | - | |
Seca5g05118 | 363 | SUPERFAMILY | Protein kinase-like (PK-like) | 31 | 340 | IPR011009 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g05118 | Seca-Chr5 | 108359186 | 108363549 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g05118 | 11 | 352 | Receptor kinase-like Gene Family | AT1G56120 | 47.368 | 1.49e-104 | 325 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_DLSV | Seca5g05118 | PK_Tyr_Ser-Thr | 8.7e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g05118 | - | - | mtr:11430773 | 589.726 |