LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g05115	ATGCTGGGTATTACTCATATGATTCAAGGAACTGCACAAAATTTGTCACCATTTGGGATATCGCAGATTGGATCACTTTCCTTAATGCAAGTTCAACCTATGACACAACAGGCTACAAGGCACGCAAGGCGAGTGTATGTTGGTGGGCTTCCTCCATTAATTAACGAGCAGGCAATTGCAGCATTCTTCAGCCATGTCATGACTGCTATTGGGGGAAATTCTGCTGGAGCAGGTGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTTGCGTTTGTGGAGATGAGAACTGTTGAAGAAGCTAGTAATGCAATGGCATTAGATGGAATAATATTTGAGGGTGTTGCTGTGAGGGTTCGTAGGCCAACAGACTATAACCCTTCATTAGCTGCAGCTCTAGGTCCTTGCCAGCCAAGTCCATACCTTAACTTATCTGCTGTTGGACTATCTGTAGGTGCAGTTGGTGGGACTGATGGACATGATCGCATTTTTGTGGGTGGGCTGCCATACTACTTTACTGAAGCACAGATGAGAGAATTGCTCCAATCTTTTGGTCCTCTCCGGTCTTTCGATATAGTTAGGGATAAAGACACTGGAAATTCTAAAGGATATGGTTTCTGCATCTATCAGGATCCAGCAGTGACAGACATTGCCTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGACGTGCGGCTGTCAGTGGACATTCTAAAACAGAGCAGGAACACATCTTTGCACAGGCCCAACAGCATATAACTATGCAGAAAATAGCTTTGGAAGTGGGTGGGTTAAATATTCCAGGAGTGGAAAGAGTGCAAACAACAAATGAAGAAATCCCCACTAAAGTTTTATGTTTGACTGAGGCCATTACAACTGATCAATTGTTGGATAATGAGGAGTATGAAGAAATATTGGAAGACATGCGGGATGAATGCTGCAAATTTGGGACCTTGATGAATGTTGTTATTCCTCGTCCAAATCACAGTGGAGAGCTGCCTCCAGGTATTGGAAAGGTACATACTTCAATTGTGATGCATTTGACTTCTCGCTTCAGCTTCTAG	1086	0.43	MLGITHMIQGTAQNLSPFGISQIGSLSLMQVQPMTQQATRHARRVYVGGLPPLINEQAIAAFFSHVMTAIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRRPTDYNPSLAAALGPCQPSPYLNLSAVGLSVGAVGGTDGHDRIFVGGLPYYFTEAQMRELLQSFGPLRSFDIVRDKDTGNSKGYGFCIYQDPAVTDIACASLNGLKMGDKTLTVRRAAVSGHSKTEQEHIFAQAQQHITMQKIALEVGGLNIPGVERVQTTNEEIPTKVLCLTEAITTDQLLDNEEYEEILEDMRDECCKFGTLMNVVIPRPNHSGELPPGIGKVHTSIVMHLTSRFSF.	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g05115	361	SUPERFAMILY	RNA-binding domain, RBD	43	128	IPR035979	GO:0003676
	Seca5g05115	361	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	165	234	IPR000504	GO:0003723
	Seca5g05115	361	CDD	RRM1_U2AF65	42	124	-	-
	Seca5g05115	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	43	126	IPR000504	GO:0003723
	Seca5g05115	361	SMART	rrm1_1	164	237	IPR000504	GO:0003723
	Seca5g05115	361	SMART	rrm1_1	44	122	IPR000504	GO:0003723
	Seca5g05115	361	Gene3D	-	38	136	IPR012677	-
	Seca5g05115	361	Gene3D	-	156	259	IPR012677	-
	Seca5g05115	361	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	163	241	IPR000504	GO:0003723
	Seca5g05115	361	Gene3D	-	286	350	IPR012677	-
	Seca5g05115	361	SUPERFAMILY	RNA-binding domain, RBD	164	337	IPR035979	GO:0003676
	Seca5g05115	361	NCBIfam	U2 snRNP auxilliary factor, large subunit, splicing factor	26	348	IPR006529	GO:0003723\|GO:0005634\|GO:0006397
	Seca5g05115	361	PANTHER	RNA-BINDING PROTEIN	10	348	-	-
	Seca5g05115	361	CDD	RRM2_U2AF65	163	239	-	-
	Seca5g05115	361	CDD	RRM3_U2AF65	289	347	-	-
	Seca5g05115	361	FunFam	U2 snRNP auxiliary factor large subunit	140	252	-	-
	Seca5g05115	361	FunFam	U2 snRNP auxiliary factor large subunit	38	139	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g05115	Seca-Chr5	108322914	108329272	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g05115	157	255	Eukaryotic Initiation Factors Gene Family	AT1G71770	25.253	1.38e-07	51.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g05115	K12837		-	cpap:110817812	531.176