Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05100 ATGGCATTTCAGCATTACTTTCCTCAGGAATTGAAAACCATTCCAAATGCTGTGACAGAGACAGAAAATTGCAATGGTTGTTTCGATTGCAACATCTGCTTAGACACTGCAAATGAACCAGTAGTCACCCTCTGTGGCCACCTTTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCATCCACAATGCCCTGTTTGCAAGGTTGATATATCCCATAGTTCAATGGTCCCACTGTATGGCAGGGGCCAGACCCAACCTGGTGGGAGTGGGAAAGCATCTTGTTGTGATATTTTTATACCACCAAGACCACCTGCTACAGGTGCTCAAGCTCTTTTGGCACCATCATCTCAAAGTGGTCAGCAGCTTCAATATCGTAATCCTTATCAGGGTCAATATTTCAGTCCTCCTCTATACCAAGAAGAGGATGCCACTTCACAAATGCTCAATCTTGGTGCCTCCATGACTCCAACATCTCACCATCCTGTGGTTGGGATGTTTGGAGAGATGGTTTTTGCTCGAGTGTTTGGCAACCCACAGAATTTGTATGCCTACCCAAATTCTTATCAGCTGATGGCAAGTAATAGCTCTAGATTGAGAAGGCAAGAGATGCAGACAGACAAATTTTTGAACAGAATTTCAATTTTTCTCTTTTGCTGCTTTCTTCTCTGTCTTATCGTCTTCTGA 714 0.4412 MAFQHYFPQELKTIPNAVTETENCNGCFDCNICLDTANEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPQCPVCKVDISHSSMVPLYGRGQTQPGGSGKASCCDIFIPPRPPATGAQALLAPSSQSGQQLQYRNPYQGQYFSPPLYQEEDATSQMLNLGASMTPTSHHPVVGMFGEMVFARVFGNPQNLYAYPNSYQLMASNSSRLRRQEMQTDKFLNRISIFLFCCFLLCLIVF. 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05100 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca5g05100 237 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Seca5g05100 237 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 129 - -
Seca5g05100 237 SMART ring_2 30 76 IPR001841 -
Seca5g05100 237 SUPERFAMILY RING/U-box 26 89 - -
Seca5g05100 237 CDD RING-HC_AtRMA-like 28 77 - -
Seca5g05100 237 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Seca5g05100 237 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Seca5g05100 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 95 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05100 Seca-Chr5 108197966 108198679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05100 10 223 C3H Transcription Factor Family AT4G27470 41.629 7.37e-51 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05100 K10666 - gmx:100816864 357.836