LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g05086	ATGATCAAACACAAGCACTCTCTCCCACTTCTTTCCATTTTCCTTCTCTTCAATTCAATCTCCGCCATCGATTTCGTCTTCAATGGCTTCAACTCTTCTGATATCTTGCTCTTTGGCAATGCCTCCGTTGATTCACGAATTCTAACCCTCACCCATCACCAAATTTTCTCAATTGGCCGTGCTCTGTACCCTCAGAAGATCCCCACCAAAAAGCAAAATTCTTCTTACGTCCACCCTTTCTCCACTTCTTTCATCTTCTCTATGGCACCTTTCGAAGATACCCTTCCCGGGCATGGCTTGGTTTTCATCTTCACACCGGTCACAGGCATCCAAGGTACAACTTCTGCTCAAAATCTGGGTCTGTTTAATCTTACCAACAATGGAAATGCTAGTAACCACGTGTTTGGGGTTGAGTTCGATGTGTTCATGAACCAAGAGTTCGATGACATAAACGACAACCATGTTGGGATCGACATAAACTCTCTCAAGTCTCTTGTCTCGCATGATGCCGGGTATTGGCCAGATAAAAGTGAAAAATCTTTTCAGAAATCGACACTTAACAATGGTGAAAATTACCAAGTTTGGATTGATTATGAAGATTCATTGTTTAATGTTACTATGGCACCGGTGGGTATGAAAAGGCCTAACAAGCCATTGTTGAATGTTTCTCTCAATTTATCTGAAGTTTTTGTGGATGAAATGTTTGTGGGGTTCACTAGTGCCACAGGGCAATTAGTTCAAAGTCACAAGATTCTGGCTTGGAGTTTTAGCAATACAAATTTTTCGTTAAGTGAAGAACTCATCACTACTGGGTTACCGTCTTTTGTGCTTTCCAAGGGGTTTATTGCAGGATTTTCAATAGGAGTTTTCTTTATTATTTGTCTCTTCGTTTTGTTGGCTCTGTTTCTGATTCAGGGGAAGCGAAGGAAGGCAAGGAAGAGACAGGAAATGGAAGATTGGGAATTAGAGTATTGGCCACACAGAATGGCTTATGAAGAAATAGAGGCATCCACAAAGGTGTTCTCTGAGGAAAACGTGATTGGTGTTGGTGGGAATGGGAAGGTCTACAAGGGTGTTTTACCAGGAGGGGCAGAGATTGCTGTGAAGCGAATTTCTCATGAAAATGATGGTCTGCGAGAATTTCTTGCAGAAATTTCAAGTCTTGGAAGATTGAAGCAAAGGAATTTGGTGGGGTTGAGAGGCTGGTGTAAAAAAGATGTGGGGAATTTCTTGTTAATTTATGACTATATGGGAAATGGAAGCTTAGACAAGAGGGTGTTTGATTGTGATGAGAGCAGGATGTTAGGTTATGAAGACAGAATGAGGGTTATTAAAGATGTGGCTTCTGCAGTCTTGTACTTGCATGAAGGGTGGGAAGCCAAAGTAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGGATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCACAGCCATGGTCAAGTTTCTAGCACCACAAAATTGGTTGGAACAGTTGGGTACATGGCTCCTGAAGTGATTAGGACTGGACGAGCTTCAACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTAGAGGTCATGTGTGGAAGGAGACCACTAGAAGAAGGTAAGCCACCTTTGGTTGAGTGGGTTTGGCAACTAATGGTACAAGGGCAACTTGTGAATGCACTTGATGAAAGGCTAAGGGCTAAACAAGAGCTCAGTGTGCAGGAAGTGGAGAGGGTGCTAGAATTGGGTTTGTTGTGTGCATACCCTGAACCAAAAGCAAGGCCAACAATGAGACAAGTGGTGAATATTTTAGAGGGGAAGAACGAGGGAGAGGATTCAGAAATTGAGAATATGGATACTTATTTGCTCCAACAGTTAAAATCAAGGGACATATTGTCTGAGTATTCTCAGTATTTTAGCTATGTGTCACACCCAACTTTTCAAGATATTCGTAACTCTTCCTCAATGTCTCTCACGTTGTCCGGATCTGTAGTTGAGGGAAGGTGA	2022	0.4219	MIKHKHSLPLLSIFLLFNSISAIDFVFNGFNSSDILLFGNASVDSRILTLTHHQIFSIGRALYPQKIPTKKQNSSYVHPFSTSFIFSMAPFEDTLPGHGLVFIFTPVTGIQGTTSAQNLGLFNLTNNGNASNHVFGVEFDVFMNQEFDDINDNHVGIDINSLKSLVSHDAGYWPDKSEKSFQKSTLNNGENYQVWIDYEDSLFNVTMAPVGMKRPNKPLLNVSLNLSEVFVDEMFVGFTSATGQLVQSHKILAWSFSNTNFSLSEELITTGLPSFVLSKGFIAGFSIGVFFIICLFVLLALFLIQGKRRKARKRQEMEDWELEYWPHRMAYEEIEASTKVFSEENVIGVGGNGKVYKGVLPGGAEIAVKRISHENDGLREFLAEISSLGRLKQRNLVGLRGWCKKDVGNFLLIYDYMGNGSLDKRVFDCDESRMLGYEDRMRVIKDVASAVLYLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVSSTTKLVGTVGYMAPEVIRTGRASTQTDVYMFGILILEVMCGRRPLEEGKPPLVEWVWQLMVQGQLVNALDERLRAKQELSVQEVERVLELGLLCAYPEPKARPTMRQVVNILEGKNEGEDSEIENMDTYLLQQLKSRDILSEYSQYFSYVSHPTFQDIRNSSSMSLTLSGSVVEGR.	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g05086	673	PANTHER	-	41	613	-	-
	Seca5g05086	673	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	262	IPR013320	-
	Seca5g05086	673	Pfam	Legume lectin domain	23	261	IPR001220	GO:0030246
	Seca5g05086	673	CDD	STKc_IRAK	347	611	-	-
	Seca5g05086	673	Gene3D	Transferase(Phosphotransferase) domain 1	417	634	-	-
	Seca5g05086	673	Pfam	Protein kinase domain	342	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g05086	673	Gene3D	Phosphorylase Kinase; domain 1	303	416	-	-
	Seca5g05086	673	ProSiteProfiles	Protein kinase domain profile.	341	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca5g05086	673	Coils	Coil	303	323	-	-
	Seca5g05086	673	ProSitePatterns	Protein kinases ATP-binding region signature.	347	369	IPR017441	GO:0005524
	Seca5g05086	673	CDD	lectin_legume_LecRK_Arcelin_ConA	23	259	IPR001220	GO:0030246
	Seca5g05086	673	Gene3D	-	21	267	-	-
	Seca5g05086	673	FunFam	L-type lectin-domain containing receptor kinase S.4	417	622	-	-
	Seca5g05086	673	SUPERFAMILY	Protein kinase-like (PK-like)	318	610	IPR011009	-
	Seca5g05086	673	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Seca5g05086	673	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	303	416	-	-
	Seca5g05086	673	FunFam	L-type lectin-domain containing receptor kinase S.4	21	264	-	-
	Seca5g05086	673	SMART	serkin_6	341	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g05086	Seca-Chr5	108062057	108064099	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g05086	18	557	Receptor kinase-like Gene Family	AT4G04960	66.123	0.0	705

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca5g05086		Pkinase	5.5e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g05086	-		-	gmx:100804391	1147.11