Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05081 ATGGAGGAAAACCCTGCAGCAGGTTCATCCAGAATTGATAGAAAATTCATAGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTACCGCAAGCTCACCTCACTTGTGCCTCATCAAACCTCAAAGGAGGGCATTTCACTGCCGGATCAGCTAGAGGAAGCCACAAACTACATAAAGAAATTACAGATGAACCTGGAGAAATTAAAAGAGAAGAAAAACACCCTACTAGGAATTGAAGGAAGGCCAAATGTGAATGTGAATGTGAATATGAATAGAGGCAACAAGACCTTGGGGTTAAAATCTCCAAAATTTGAAATCCAACAAATGGGTTCAGTCTTGCAGGTTGCCCTAATAACTGGCTTGGATTCTCAGTTCATGTTCAATGAAACCATTCGTGTTCTTCATGAAGAAGGAGTGGATATTGTTAATGCCAGTTATAAAGTCATTCAAGATGCTGTTTTCCATTCAATACACTGTCAGGTCGTAGGGGAGTTTGCCAATGGAACTACTGCAACTGAAAGGATATCTCAGAGGCTAAAGAAGTTTATGTATAATGATAATAACAATAATAATAATGCCTTTTACAATGTAATATGA 597 0.3819 MEENPAAGSSRIDRKFIERNRRNQMKALYRKLTSLVPHQTSKEGISLPDQLEEATNYIKKLQMNLEKLKEKKNTLLGIEGRPNVNVNVNMNRGNKTLGLKSPKFEIQQMGSVLQVALITGLDSQFMFNETIRVLHEEGVDIVNASYKVIQDAVFHSIHCQVVGEFANGTTATERISQRLKKFMYNDNNNNNNAFYNVI. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05081 198 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 75 IPR036638 GO:0046983
Seca5g05081 198 Gene3D - 3 82 IPR036638 GO:0046983
Seca5g05081 198 Coils Coil 51 78 - -
Seca5g05081 198 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 183 - -
Seca5g05081 198 Pfam Helix-loop-helix DNA-binding domain 14 62 IPR011598 GO:0046983
Seca5g05081 198 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 61 IPR011598 GO:0046983
Seca5g05081 198 FunFam Transcription factor bHLH162 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05081 Seca-Chr5 108014550 108015799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05081 7 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.604 5.20e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g05081 HLH 5.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05081 - - gmx:100784418 237.269