Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05071 ATGGAGCAACAAGGAGGAGGAGGTGAGGTCAATAAGCAACCTCAGCCTCAGCCTCAACCTCCGCCTCAGAAGTGCCCTCGCTGTGACTCTCTCAACACCAAATTCTGCTATTACAACAACTATAGCTTGACTCAGCCTCGTTACTTCTGCAAAACATGCAGAAGGTACTGGACTCAAGGTGGAACCTTGAGGAACGTACCTGTTGGTGGTGGTTGCCGTAAAGGTAAGCGCACCAAAAACTCTCCATCTTCCAGCAGTTCTGCTGAAAATCCTTCCCTGCCATCACAGAATCAGATGGTGGTTCAAACCCAGCCACCGGTGGTGAGGGCTAAAGACCCTTCTTCACTTGTGACTTCCCCTGTTGTTCCCTTTTATCAAGGTGGTGCTGGTGGGTACTTGTCTACTATGGCAGCGATTCATCAACTGAACCAACCACACCCTTTTAATCAGTCTCTGAATCTTGGGGGTGATGCTCTGCGTTCTTCCAATTTTGGTCTTGTTCCTGCAGGTTTTAATGCTGCTGCTGCTTCTCTTCCTTCAATTCGTCCACCGCAATTCTATCAAGTGGGTAGTGGAGGAAGCAGGGAGGTGCCTTCTCTGTATACCTCAGAACAAGGTTTGATTCCATCCACCATGGCTAATACCAGTGCTGGCCTTGATTGGTCTCAGAGCTTCATCAATAATAATGTTGCTGGTAATAGGGCCTCTGATGCATCTCTCTGGAGCACTATTAACACCACTTCCAATATTAGTGGTAACTCTGTGAGGAGTGCTAGTGCTGGACCTGCTGGTGCTGGTTCTTCTTCTTTGGTCCCAAATCAATGGCCTGATCTGTCAGGGTTTGACCCACCTCAGTGA 858 0.486 MEQQGGGGEVNKQPQPQPQPPPQKCPRCDSLNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTKNSPSSSSSAENPSLPSQNQMVVQTQPPVVRAKDPSSLVTSPVVPFYQGGAGGYLSTMAAIHQLNQPHPFNQSLNLGGDALRSSNFGLVPAGFNAAAASLPSIRPPQFYQVGSGGSREVPSLYTSEQGLIPSTMANTSAGLDWSQSFINNNVAGNRASDASLWSTINTTSNISGNSVRSASAGPAGAGSSSLVPNQWPDLSGFDPPQ. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05071 285 MobiDBLite consensus disorder prediction 77 98 - -
Seca5g05071 285 MobiDBLite consensus disorder prediction 251 275 - -
Seca5g05071 285 MobiDBLite consensus disorder prediction 67 98 - -
Seca5g05071 285 MobiDBLite consensus disorder prediction 251 285 - -
Seca5g05071 285 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Seca5g05071 285 Pfam Dof domain, zinc finger 23 77 IPR003851 GO:0003677|GO:0006355
Seca5g05071 285 MobiDBLite consensus disorder prediction 1 25 - -
Seca5g05071 285 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Seca5g05071 285 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 188 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05071 Seca-Chr5 107934605 107935462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05071 20 142 C2C2-Dof Transcription Factor Family AT4G21050 53.175 2.46e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca5g05071 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05071 - - gmx:102668884 295.049