Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05070 ATGTTGGGTAACTGTGAGAAAATGGTAGGCATCCCTCCAACGACTATTAACCAATGGTCGTCACTGCAGAGTGATGAGATAGATGATGGTAATAAGGTGATGATGAGGATGGAAAAAGCAGGTGATGAAGGTGAGGAGCAGCAGCAAGAAGGGCTAAAGTGTCCTCGTTGTGAGTCATCAAACACAAAGTTCTGTTACTACAACAACTACAGCTTGTCACAGCCAAGACACTTTTGCAAAGCCTGCAAGAGATACTGGACAAGAGGTGGAACTCTCAGGAATGTCCCTGTTGGTGGTGGTTGCAGAAAAAACAAGCGTCTCAAGCGTCCAACATCTAATTCACAGCCCCAGATCGATGCTGCTAATGCTTCAACCTCAAATCACATCACTCCTATGTTTTATGGTAACTCTTGTGATGTGAATCTTCCATTCCCAAGGTTCAATTCTAGAAATATCACAACAGGGTTTGATGATCTTCAGCCTCAGTTGAATGCCCTTGGATTAGGTTTTTCGTCATCATCAGGGTTTATGTCCAGTACTACTGAAGCTAATGACAATGGTTACAGGAATGGATTTAGTTCAAATGTTTCGAGTTATGATTCTATTTTCAGTTCTACATCCAGTGTTATGCCTACTCTGCTGCAGCAGCAGCAGAATAAATGGATGAATGGTGGTCCTTCTTTGGAGGGAGTGCAAAGCAGTGAGACAGAGACTGCAGGGATGGTGGCTTTAAAAGACGTGAAAGTAGAATTAGGAGGACAAAACACAAACAGGTTGGAGTACTGGAATATGAATGGTGCTTGTCAAAACCAGATGATCATGGACCATGTGGCCTTGTACGATCCTTCACTTTACTGGAATATGGGTGCTGTTAGTGTTTGGAACGATCAACCTAACATTGGTCCATCAGTTACTTCTCTCATCTAG 927 0.4304 MLGNCEKMVGIPPTTINQWSSLQSDEIDDGNKVMMRMEKAGDEGEEQQQEGLKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRPTSNSQPQIDAANASTSNHITPMFYGNSCDVNLPFPRFNSRNITTGFDDLQPQLNALGLGFSSSSGFMSSTTEANDNGYRNGFSSNVSSYDSIFSSTSSVMPTLLQQQQNKWMNGGPSLEGVQSSETETAGMVALKDVKVELGGQNTNRLEYWNMNGACQNQMIMDHVALYDPSLYWNMGAVSVWNDQPNIGPSVTSLI. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05070 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 42 215 IPR045174 GO:0003700|GO:0006355
Seca5g05070 308 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Seca5g05070 308 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Seca5g05070 308 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05070 Seca-Chr5 107907457 107909094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05070 1 308 C2C2-Dof Transcription Factor Family AT1G28310 37.604 6.30e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca5g05070 zf-Dof 2.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05070 - - gmx:100801049 291.197