Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05069 ATGGAGGAAAGGTGGGAGGGTGAGGGGAAGATGAGCATGAAGTACAAGGAGGAGGAAGAGTATGAAGATGATGAAGAGGAGGAAGAGGAATTAGAGGTGAGTGATTATGGAGGAGAGGATGGGAGGAAGAAGAGAGTGGTGAGTAGTGATGTGTACAACAACAACAACAAGAGATCAGGGTCCAAAGGTGGAGGGTCAGTGCCACCTTCTTGTCAGGTGGATAGTTGTAATACTGATCTAACTCATGCTAAGCAGTACCATCGCCGCCATAAGGTCTGTGAGCTTCATGCCAAGGCTCCTTCCGTACTCATTGCAGACCAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCGTGGATGA 456 0.4671 MEERWEGEGKMSMKYKEEEEYEDDEEEEEELEVSDYGGEDGRKKRVVSSDVYNNNNKRSGSKGGGSVPPSCQVDSCNTDLTHAKQYHRRHKVCELHAKAPSVLIADQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEFRG. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05069 151 MobiDBLite consensus disorder prediction 48 71 - -
Seca5g05069 151 MobiDBLite consensus disorder prediction 18 35 - -
Seca5g05069 151 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
Seca5g05069 151 MobiDBLite consensus disorder prediction 1 17 - -
Seca5g05069 151 PIRSF SBP 5 151 IPR017238 GO:0003677|GO:0003700|GO:0009908
Seca5g05069 151 Pfam SBP domain 71 144 IPR004333 GO:0003677
Seca5g05069 151 MobiDBLite consensus disorder prediction 1 71 - -
Seca5g05069 151 SUPERFAMILY SBT domain 69 148 IPR036893 GO:0003677|GO:0005634
Seca5g05069 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 146 IPR044817 GO:0003677
Seca5g05069 151 Coils Coil 14 34 - -
Seca5g05069 151 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Seca5g05069 151 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05069 Seca-Chr5 107882498 107883928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05069 71 148 SBP-box Gene Family AT2G33810 73.077 3.97e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca5g05069 SBP 1.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05069 - - gmx:100782285 192.586