Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g05069 | ATGGAGGAAAGGTGGGAGGGTGAGGGGAAGATGAGCATGAAGTACAAGGAGGAGGAAGAGTATGAAGATGATGAAGAGGAGGAAGAGGAATTAGAGGTGAGTGATTATGGAGGAGAGGATGGGAGGAAGAAGAGAGTGGTGAGTAGTGATGTGTACAACAACAACAACAAGAGATCAGGGTCCAAAGGTGGAGGGTCAGTGCCACCTTCTTGTCAGGTGGATAGTTGTAATACTGATCTAACTCATGCTAAGCAGTACCATCGCCGCCATAAGGTCTGTGAGCTTCATGCCAAGGCTCCTTCCGTACTCATTGCAGACCAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCGTGGATGA | 456 | 0.4671 | MEERWEGEGKMSMKYKEEEEYEDDEEEEEELEVSDYGGEDGRKKRVVSSDVYNNNNKRSGSKGGGSVPPSCQVDSCNTDLTHAKQYHRRHKVCELHAKAPSVLIADQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEFRG. | 152 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g05069 | 151 | MobiDBLite | consensus disorder prediction | 48 | 71 | - | - | |
Seca5g05069 | 151 | MobiDBLite | consensus disorder prediction | 18 | 35 | - | - | |
Seca5g05069 | 151 | FunFam | Squamosa promoter-binding-like protein 14 | 62 | 132 | - | - | |
Seca5g05069 | 151 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Seca5g05069 | 151 | PIRSF | SBP | 5 | 151 | IPR017238 | GO:0003677|GO:0003700|GO:0009908 | |
Seca5g05069 | 151 | Pfam | SBP domain | 71 | 144 | IPR004333 | GO:0003677 | |
Seca5g05069 | 151 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - | |
Seca5g05069 | 151 | SUPERFAMILY | SBT domain | 69 | 148 | IPR036893 | GO:0003677|GO:0005634 | |
Seca5g05069 | 151 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 34 | 146 | IPR044817 | GO:0003677 | |
Seca5g05069 | 151 | Coils | Coil | 14 | 34 | - | - | |
Seca5g05069 | 151 | ProSiteProfiles | Zinc finger SBP-type profile. | 68 | 145 | IPR004333 | GO:0003677 | |
Seca5g05069 | 151 | Gene3D | - | 61 | 132 | IPR036893 | GO:0003677|GO:0005634 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g05069 | Seca-Chr5 | 107882498 | 107883928 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g05069 | 71 | 148 | SBP-box Gene Family | AT2G33810 | 73.077 | 3.97e-40 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | SBP | Seca5g05069 | SBP | 1.4e-32 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g05069 | - | - | gmx:100782285 | 192.586 |