Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05065 ATGGAATCTGAGGGGCAGGAGGAGAACTTGGGGCCAGTTTCTTCTGTGGCAGAAAACCCTGAAGTAATGCCACCATCTAGTGTGCATTGCATGGCAGAGAATGATGCCATACTTAACGCACCTGTTCCTTCATATTCAAGCCAACATATGGAATCTGAGGGGCAGGAGAAGAACTTGGGGCCAGTTTCTTCTGTGGCAGAAAACCCTGAAGTAATGCCACCATCTAGTGTGCATTGCATGGCAGAGAATGATGCCATGCTTAAAGCACCTGTTCCTTCATGTGAGACACTAACATTGAAAAAGGAAGAGTTTCACCCGAAACATGAAATTTCAAGTCATTCAAATTCAAGAGAAAACCTGAATATGGCTGAAGATGGCAAAAGTCAAGGATTAGATGTTGATGTTGAAAATGCTGGATCTCCTCTACGGATAAAAACCTTTGGAGGATGCAGTGAACCAGGTTCCAATAGCAAAGCTTATTCATCAGGTGTTAAGGACGGTGATGCTAGGGCCACCAAGTCATCTAGTGAAACTGGAAAAGATGTGGTTAGTGGCCTCCTACCGAGAGATTGCTTTGCTGAGGATGCTGATGGTGGTCAGAATTCTAAGAACAAAATTTTGCAGTCGGAAATAGAGTCAAGGGTTGATGTGAAACAAATGACATCAAGGACTAGAAATCTGTCTCCCAGTGCTGAGACTAAAGAAGGAAACAAACGGCCCACAATTATATGTGATTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGACACTGTGAGTAAAACTGACCAGGAGGAGGCTGAAGAAGGAGACTTAGTTGCTGCACATCAGAAGAGAGAGTTGAAATTGGAAGAAGGTGTTAAGGAAAATGTTGAGAGAGCAAGGATGAATGAGGAAGAAGCAAGCCCAAGTTGGCATCCATCTCATGAAAAGCAGAAGCTTCCATCAAGGGACAGCTTGTTTCCAGAGAATAGATATGCATTTAATGCATCAAACAATTATTTTAGCTCAAATCTTTCCTCATATTCATCCCATGCAGAGGGAATGGCTACCATTCGAAGCCAGCCTATGTATAAAGGGTATACTTCCACAGGTTTGAGTCATTCACCTATTTCAAGCTTGGGTACTCAGTTTCCAGCTACAAGCATGTCACTCTCCCATCGGATTTTAGCCCAATCAGGATGTTCGTTGCCTTTTAGTTCATCTTTAGGTCCTAGTACTTTGGATTCTCAAAAATTTTTGAACAGTGAGAAAGAATATCATGCCTCCACTTTCTCTGGCTCAGAGCGGGAAGATTTTCCTCTAGTTGGTGCATCTAGGGTTCCATCACATTCCCTTGGATATAAATCAAAAATTCATTCTTATGATTGGGAACCTTCTGTGCCATTTCGACCATCCTTTTTTATTACTTCTATGAATGTATCATCCCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAAGCTTCCCTTTTAATTCAAGGATCATCTATCCAGGGTTCATCACAGGTGCGGCCATGTGGTGATTCGGCTGCAGTTGGAAAACGCATGTCTGATCTTAATGAGGACAAAAGTTCTGTATCTTCTCATAATAGAATTTACAAAAATGAGCCAAACAAAAGTTGTGTTCCTCACGAAAAAGATTGTCTTGCAACTGAAACAGAGATAACATCAGGAACTGATGGAAATTACCAAAATGGTAAAATAAGTGCAGGACAACATACCTTTGGTGTTGAAGATATTACAAAAGCAGAGAAAGAATGGACTGAGCATGATGCTAGACATCATGGTGAGGGATCAGAGCACAAAAGGAGGAGAGTAGAAAAGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAGACAGATGACAGTATGCAGAAAGAAATGAAGGCACTAAAATATTTTCGTGTGGCTCTTGTTGATCTAGTGAAAGAGTTGTTAAAACCATCTTGGCACGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACCTTAGAGCCCCACCAGATTCCAACCACTGTAGATACTGCTAAGCAATATGTTTCTTCGTGTCGAGCGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAATCTTGA 2202 0.4105 MESEGQEENLGPVSSVAENPEVMPPSSVHCMAENDAILNAPVPSYSSQHMESEGQEKNLGPVSSVAENPEVMPPSSVHCMAENDAMLKAPVPSCETLTLKKEEFHPKHEISSHSNSRENLNMAEDGKSQGLDVDVENAGSPLRIKTFGGCSEPGSNSKAYSSGVKDGDARATKSSSETGKDVVSGLLPRDCFAEDADGGQNSKNKILQSEIESRVDVKQMTSRTRNLSPSAETKEGNKRPTIICDFFAKGWCIRGSSCSFLHIKDTVSKTDQEEAEEGDLVAAHQKRELKLEEGVKENVERARMNEEEASPSWHPSHEKQKLPSRDSLFPENRYAFNASNNYFSSNLSSYSSHAEGMATIRSQPMYKGYTSTGLSHSPISSLGTQFPATSMSLSHRILAQSGCSLPFSSSLGPSTLDSQKFLNSEKEYHASTFSGSEREDFPLVGASRVPSHSLGYKSKIHSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSSIQGSSQVRPCGDSAAVGKRMSDLNEDKSSVSSHNRIYKNEPNKSCVPHEKDCLATETEITSGTDGNYQNGKISAGQHTFGVEDITKAEKEWTEHDARHHGEGSEHKRRRVEKDKKIHEMDVDFQTDDSMQKEMKALKYFRVALVDLVKELLKPSWHEGRLSKDAHIMIVKKSVDKVVSTLEPHQIPTTVDTAKQYVSSCRAKIAKLVNGYVNKYGKS. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05065 733 MobiDBLite consensus disorder prediction 305 324 - -
Seca5g05065 733 MobiDBLite consensus disorder prediction 220 235 - -
Seca5g05065 733 Gene3D - 229 304 - -
Seca5g05065 733 SUPERFAMILY CCCH zinc finger 238 262 IPR036855 GO:0046872
Seca5g05065 733 ProSiteProfiles Zinc finger C3H1-type profile. 238 265 IPR000571 GO:0046872
Seca5g05065 733 MobiDBLite consensus disorder prediction 1 27 - -
Seca5g05065 733 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 221 732 - -
Seca5g05065 733 MobiDBLite consensus disorder prediction 144 236 - -
Seca5g05065 733 MobiDBLite consensus disorder prediction 539 558 - -
Seca5g05065 733 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 242 262 IPR000571 GO:0046872
Seca5g05065 733 SMART c3hfinal6 238 264 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05065 Seca-Chr5 107853690 107858924 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca5g05065 zf-CCCH 3.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05065 - - aprc:113872594 952.97