Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05063 ATGGCTTCTTCGGCTTCTCGTGAGGGACACTACAGAGGGGTCAGGAAGCGACCCTGGGGACGCTACGCTGCTGAAATACGCGACCCTTGGAAGAAGACACGTGTCTGGTTGGGTACATTTGATACTCCTGAAGAGGCTGCTCTTGCCTACGACGGCGCCGCCCGTTCTCTCCGTGGTGCTAAGGCCAAGACCAACTTTCCTCCGGCGCCGGTCGCCCCCGCCCTCTGCCTCGACCTCAACTCCCCAACCTCCGATCATCATCGCTGGCCCTCCGTCCCCACACGCGGCCTTGTCCTCAGCGAGTTTCTTCACACCGGCGTTCTCAAAGACATCCACAACCCACCTCAGCCTCCACCACCCGCCGTGGTGGCCGGACACAGGCGTGTCGACGGCGCTGTAGCTGTTTCAGGTGTGACTCAGATGGCTGAACCTTCCCCTACGGCGTCGTTTCTGGGACTCGTTCGGCGCGGGATTCCCATTGACTTGAACGAACCTCCACCGTTGTGGCTATGA 513 0.6082 MASSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAPALCLDLNSPTSDHHRWPSVPTRGLVLSEFLHTGVLKDIHNPPQPPPPAVVAGHRRVDGAVAVSGVTQMAEPSPTASFLGLVRRGIPIDLNEPPPLWL. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05063 170 SUPERFAMILY DNA-binding domain 10 67 IPR016177 GO:0003677
Seca5g05063 170 PRINTS Ethylene responsive element binding protein signature 33 49 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 ProSiteProfiles AP2/ERF domain profile. 10 67 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 Pfam AP2 domain 10 59 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 86 - -
Seca5g05063 170 SMART rav1_2 10 73 IPR001471 GO:0003700|GO:0006355
Seca5g05063 170 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Seca5g05063 170 FunFam Ethylene-responsive transcription factor 2 10 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05063 Seca-Chr5 107830527 107831039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05063 2 170 AP2-EREBP Transcription Factor Family AT1G28360 45.813 7.43e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca5g05063 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05063 - - cam:101504196 280.796