Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05062 ATGGCGCCGAGGGATAAGACGGCTGGCGTTAAGGTGAACGGCAACAGTAACGGCACCGTGAAGGAGGTGCATTTTCGGGGTGTGAGGAAGAGGCCATGGGGGAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGTGTTTGGCTCGGCACCTTTGACACGGCGGAAGAGGCGGCGAGAGCCTACGACGCCGCCGCACGCGAGTTCCGTGGCCCCAAGGCTAAAACCAACTTCCCCCTCCCTTCAGACAATGTCAAAAACCAGAGCCCTAGCCAGAGCAGCACCGTTGAATCCTCCAGCCGCGACGCTGCCGCTGCCGTAGCCGATTCCTCGCCGCTGGACCTTAACCTGGCCCCTGCCGGAGCAGGATTCGCCGGCCACGTTCGTTTCCCCTTCCAGCATCAGTTCCCGCCGATGCCAGCGGCGAACCAGGCGTTGTTCTTCGACGCTGTCCTACGCAGCGGTATGGTGGGACCCCGTCCTGGCCAACGCTTCTTCGACTTTAATCTTCCGTTGGCGGCGAGTGAGTTTCACGCGACGGCAGGTGCACAAAGCGACTCGGACTCGTCCTCCGTGATCGATCTGAACCATCTAGAATATGATGTTAAAGGTGGTAGAGACTTCGATCTCGACCTTAACCACCCTCCTCCGGAAGACGACGTCGCTTAA 675 0.6 MAPRDKTAGVKVNGNSNGTVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPLPSDNVKNQSPSQSSTVESSSRDAAAAVADSSPLDLNLAPAGAGFAGHVRFPFQHQFPPMPAANQALFFDAVLRSGMVGPRPGQRFFDFNLPLAASEFHATAGAQSDSDSSSVIDLNHLEYDVKGGRDFDLDLNHPPPEDDVA. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05062 224 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Seca5g05062 224 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Seca5g05062 224 MobiDBLite consensus disorder prediction 75 107 - -
Seca5g05062 224 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Seca5g05062 224 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Seca5g05062 224 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Seca5g05062 224 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Seca5g05062 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 150 - -
Seca5g05062 224 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Seca5g05062 224 MobiDBLite consensus disorder prediction 82 107 - -
Seca5g05062 224 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Seca5g05062 224 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05062 Seca-Chr5 107791254 107791928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05062 21 101 AP2-EREBP Transcription Factor Family AT5G44210 74.713 7.69e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca5g05062 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05062 K09286 - gmx:100170742 295.049