Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05049 ATGGGTGTGGACTACTATGAGATTTTGGAGGTTGATAGGAATGCAACAGATGAAGAATTGAAGAAAGCTTACAGAAAACTTGCCATGAAATGGCACCCTGACAAGAACCCAGACAATAAGAACGAGGCTGAAACTAAATTCAAACTCATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAAGCAGCCTTAAAGGTGGAATGCCACCACCGGATCATGCGGGTGTGGATTCATTCTTCCAGACTGGGGGTGGCCCAACAACGTTTAGGTTCAATCCTAGGGATCCAAATGGCATTTTTGCAGAAGTATTTGGCTTTTCAAGCCCATTTGGAAGAACGGGAATGGGAGTTGGTGGTTGTGGTAGAGGCATGGGGGGTGGGTCGTGGGTGTCAAGGTCCTTCGGAGGAATGTTTGGCAAAGACGTGTTTGGAGAAGGTAGGCCCATGAGTCAAGGTCCACGACGCAAGGCACCTCCTATCGAGAATACATTACCTTGCAGCCTTGAGGAACTCTATAAGGGTACTACCAAAAAGATGAAGATCTCAAGGCAAATTGCACATGCAAGCGGTAAAACTCTGCTTGTGGAGGAAATACTAATCATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACTTTCCCAGAAAAAGGAAATGAGCAACCAAATGTTATTGCTGCAGATCTAGTGTTCATTATTGATGAAAAACCTCACAGCATATTTACAAGAGATGGTAATGATTTGGTCATGACACAAAAGATATCACTTGCAGAAGGTGAAGTTCTTACTGGCTACACCTTCCAACTTACAACTCTAGATGGCAGGGGTCTAACCATTGCCATAAACAATGTGATTGATCCAAACTACGAAAAAGTGATCACTGGGGAAGGTATGCCAATTTCTAAAGATCCTTCACAGAGGGGTAACCTTAGGATCAAATTCAACATCAATTTCCCAAGCATTGTTGATGCCGGGGTAGAAAGCTAG 1020 0.4363 MGVDYYEILEVDRNATDEELKKAYRKLAMKWHPDKNPDNKNEAETKFKLISEAYEVLSDPQKRAIYDRYGESSLKGGMPPPDHAGVDSFFQTGGGPTTFRFNPRDPNGIFAEVFGFSSPFGRTGMGVGGCGRGMGGGSWVSRSFGGMFGKDVFGEGRPMSQGPRRKAPPIENTLPCSLEELYKGTTKKMKISRQIAHASGKTLLVEEILIIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHSIFTRDGNDLVMTQKISLAEGEVLTGYTFQLTTLDGRGLTIAINNVIDPNYEKVITGEGMPISKDPSQRGNLRIKFNINFPSIVDAGVES. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05049 339 Pfam DnaJ C terminal domain 170 330 IPR002939 -
Seca5g05049 339 SMART dnaj_3 3 62 IPR001623 -
Seca5g05049 339 Gene3D DnaJ domain 3 124 IPR036869 -
Seca5g05049 339 FunFam Dnaj homolog subfamily b member 166 247 - -
Seca5g05049 339 CDD DnaJ 4 59 IPR001623 -
Seca5g05049 339 Gene3D - 169 247 - -
Seca5g05049 339 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca5g05049 339 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca5g05049 339 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca5g05049 339 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca5g05049 339 CDD DnaJ_C 168 331 - -
Seca5g05049 339 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca5g05049 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 260 IPR008971 GO:0006457|GO:0051082
Seca5g05049 339 SUPERFAMILY Chaperone J-domain 3 101 IPR036869 -
Seca5g05049 339 SUPERFAMILY HSP40/DnaJ peptide-binding domain 252 332 IPR008971 GO:0006457|GO:0051082
Seca5g05049 339 Gene3D - 249 331 - -
Seca5g05049 339 FunFam DnaJ subfamily B member 13 3 124 - -
Seca5g05049 339 Pfam DnaJ domain 4 67 IPR001623 -
Seca5g05049 339 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca5g05049 339 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 331 - -
Seca5g05049 339 FunFam DnaJ subfamily B member 13 249 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05049 Seca-Chr5 107699754 107702981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05049 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.80e-09 56.6