Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05048 ATGGAGAACGAGGCTGCTTCAGAGGCAGAGAACAATTCCCAGAAGAGAGACGATGCGGGTGACAATAACAGCAATGGCGACAACAACAACAACAATGGAAGCAACAGCAAAATTGTGAATTCCAGTGAGGGTCAGAGCAAGCCCAAGCGCCAGATGAAGACTCCTTTTCAGCTTGAAACGCTTGAAAAAGCTTATGCTTTGGAGACGTACCCGTCGGAGGCGATGAGGGCGCAACTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTTTGTCACCGGCGGTTGAAGGACAAGAAGGACTTGCCGCCAAAGAAGCCAAAGAAGGCGCCTACTTTGCCGGATTCTCCTACTGATGACCCGAGGTTGGGCCCCGAACTTGGTAATGACTACGGATCCGGGTCGGGCTCTGGGTCAAGTCCTTTCACCCGTTCGGAGTTGCGGAATGTGGGGCCCCGGGGAGTGCCAGGGTACTATGAGTCACCACAGACTATAATGGAACTTAGAGCAATTGCTTGTGTGGAGGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCCATTCTAGGAGTGGAGTTTGATTCATTGCCACCGGATGCATTCGGGGCACCCATTGGTATAGTCATTCAGCCTGTGTTGCTATTTATAACCTGCAGAATGAGTGAGAGTGACTATGCACTTGTGTTGAATTCAGCTTCTGTTACGGAACAGCAAAAGCGGCCTAGTCTTGCCTATGACAGTAAAATATATGAAAGACATGATGTTAGAACACATAAGGTTGGTTTTCAGGTGCTTCTTCTGTTGCTGCTGCTTATCGTTCAAAACCCTTGGGTGCTGGCAATAGCAAGGACATTCCCTGAATATCCATTTCTTCCGAATCAGCCTGGCATTAAATCTGAAGCTTTTGGACAATTGAGTCAACCTCATTCATATGATCCAATGGAGGGTTCTGCCAGAACTCCTCCTTTTCCCCTTGGAAATGAACATTTACCCAGAGTTCATGCTACCCAAAGTCATTCTTCTCGTGTTCGCCTTTTGTCTCAACAGGAGAAGCAACCGATTCCCTATCCATCTCCTCCTCGAGACAATGATGTCATCCCGAAAAGGGAACCCCACACAAGCATATCCAATACTGGAACAAGCTCCCAATTCACAGATCACGCTACTGTCAAACAAGAAAATCCTCATGCAACTGTCAAACAAGAAAATCCTCATGCTTCACCTGCTGGACAAGTTTTCCATAATGATGCAATATTGCGGATGGAGAGGAAACGGAAGAGTGATGAAGCCAGGGTTGCAAAGGATGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGATTGAGGAAAGAAATGGAAAGACAAGATCGGGAAAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGACGGGAGATGGAACGGAGGGAAAAGTTTTTACTGAAAGAACATTTAAGAGCTGAGAAAAGGAGGCGAAAAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAGGCTGCCCTTGAAAAGGCAACTGCTCGTAGAATAGCTAAAGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGACTTACCTCTATTATCCACATTGATCTTGATACATTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCCAAGAGTGTACAGCTAAAGAAGCCATTTTCTATCCAGCCCTGGCTCAACTCAGAACAAAATGTTGGGAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTGCTGATGTTCTTGAGCTGTGGCCTTTTACTCTTGATGAGTTTGTACAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAACCAGAATGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGACATACGAAATTGGCAGAAAAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGTTAGCACTATCTGCAGGATTTGGACCACAGCTGAAGAAAAGAAGTGTTACGTGGTCATATGCAAATGATAAAGATGAGGGAAGAAGCTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCAGTGGCGAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCAAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCACGTTCTCTCACTGGAGGGTAGCAAGGGTTTGACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACTAGCAAGACTCCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGATGCTAAGCTTTTTGAAAGGATAGCTCCATCAACATATCGTGTACGGGCTGCATTTAGAAAGGATCCTGCTGATGCTGAATCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGATGAGGTTGAAAGAGAAGAAGAGTCAGAAAGTGATGATGAAGTTGATGAGGATCCTGAAGACGATGATTTGGTAAATCCTTCAAGGGAAAACCAAAATCCAGAACAGTATGATGACACAAACACTTGCTCATCAAATGGGAAAGAAAATTTGGGTCATGATGTAGACCTTATTCAAAATGAGTTTGATACGGATCTGCCTTGTTTTCCTGAGAATGGTTCCAAGGATGCTGAATGTCCTAGTTCTGTCACAGGACAACCTGTTGCATGTGAAGATTTAAATACTGGAAATCTTGATGAAGATAATATGGAAATCGATGAAAGTAAGTCTGGTGAATCCTGGGTTCAAGGGCTTACCGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTATGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGATTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTAAAAGATGATAATATTGGTAAATCAGATTTTCCATCTCTTAATGGAAATAAAGTTGAGACACAATACACATATCCCGTTGTAGAGGGAAACCAAAGCCCATTGCTTGACATTAATATTAGCAATGTTAATAATGAAGCATCACCCAGCACTGCAGAAAACCAAAAAGGAGCTCCCATTACACAACACCTGCCTATGGAAAAGTCCTCATCAATTCAAGATTTCTGCACAGGCACAGGTCTAGACAACCCTCAGACTCAGGCACCTCCACAATATTCAAAAAGGTCACGTTCACAGTTGAAATCTTATATTGCCCACATGGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAATTCGTTGCATCTGCATCTAGCAATGATCCTGGTTCTGGCAGGATCTTCGTTGAACATCATGATGGCAATTGGAGGCTCATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGAAATCACTGGATTCACGGGGGATCAGGGAATCTCATTTACGCATAATGTTGAAAAAGATTGAGAATTCCTTTAAAGGAAATGTTCGAAAGAATACACAATGTGCCAAAATTGGAAGCAGAGGTGAAGTTTCTATTAAAAATGAAGCTAATGAAACATATCCTATCCCTGATCACCATGCTGGATCTGCCAGTCCCAGCAGTACCCTTCTTGACTTGAACTCTGGTGCATCTGAAATTTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGAGAAAAAAGCTGCCTTCAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAATCCATCAATTTTATGTGCAATGAAATATGGCATAAAGAGATGCAAACCTCAGGTGGACATTTGTGATATCTGTCTCAATCCTTATTTTGTTGAAGACTTCCATTGCAATTCCTGCCACCGGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGGGAAAAATTTTCGAAAGATACTTGTGTTTTGGAATATTCTCTCCCCTTACGGACAAGATTGCTTAAGGTCCTGTTGGCTTGTATGGAGGTGTCTGTTCTCTCTGAAGCATTTGGAACAGTTTGGACCGATAATATTAGGAGGCATTGGGGTGTGAAGTTGAGTAAATCGTCTTCTGTTGAGGAACTTTTACAGATATTGACTCTATTTGAAAGAGCACTACGGCGAGATTTTCTGTCATCAAACTTCTCTACAACAGATGAATTGTTGGGATCAGGCAATGTGTCAGGAAATTCTGCACATGCTTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACAAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGTTTGATTCATCCATCAGCTATGTAAAGCTCGAGAAAGTTGAGCCTTGTGAGGAGAAAGAAGCGAGACAACAAGTAAAGCTTCCCTCAAGATATACTCCCTTTAAATCTAATAGGGAGGTTGATCCAGCAGAATTTGACCATGATGTATTCACCAGAGATAAATCTGCTCCTAATAAAATTGTAAGAAGTGGCAATAAACGTGGACGGGGGACTAATGATCAAGGACGGGGTAAAAAACTGTCAAAAAGAATGTACAATTCCAAACGAGATACTGGCCGCCGAAATGTTAAGGTCACTGAGAATCTAAGTCACAAATTAAAACAGCAGGGACGGGGAACACAAGGACAAGGTGGTGGACGAGGTCGTCGAACGGTCAGGAAACGGAGAGTAGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGCCATACAGCACCCAGTCATAGCTCCAAGTGTGGTAGAGAATCATTGAGAAGCTTGGATGAGGAATGGGATGGAGAAAAGGCCAGTCCCATGGCCAGTCCCATGACTCCTGTACACATTAGGGTTGCTGACAATAGTGCTGAAGAGGTGGAATCTGATGACAATGCTCAAGCAGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTATAATGGTGTCCCTCCTAACCGATGGAGTAGAGATATGGTTGTAATGAGTGATGAAGATGCAGATGCTTTTGAAGATGACAATGACAATGGCAATGAAATTGAAGAGAACGAAGAGGAGGAGGATTCGGAGGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGCAAATAGAGTAGTAAACGCAGGAGGCTCTGACTCGGCTCTGTCTGAAGATTCTTCTGATTAG 5472 0.4318 MENEAASEAENNSQKRDDAGDNNSNGDNNNNNGSNSKIVNSSEGQSKPKRQMKTPFQLETLEKAYALETYPSEAMRAQLSEKLGLSDRQLQMWFCHRRLKDKKDLPPKKPKKAPTLPDSPTDDPRLGPELGNDYGSGSGSGSSPFTRSELRNVGPRGVPGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDSLPPDAFGAPIGIVIQPVLLFITCRMSESDYALVLNSASVTEQQKRPSLAYDSKIYERHDVRTHKVGFQVLLLLLLLIVQNPWVLAIARTFPEYPFLPNQPGIKSEAFGQLSQPHSYDPMEGSARTPPFPLGNEHLPRVHATQSHSSRVRLLSQQEKQPIPYPSPPRDNDVIPKREPHTSISNTGTSSQFTDHATVKQENPHATVKQENPHASPAGQVFHNDAILRMERKRKSDEARVAKDVEAYEMRMRKELEKQDNLRRKSEERLRKEMERQDRERRKEEERLMRERQREEERSKREQRREMERREKFLLKEHLRAEKRRRKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAAASKGLTSIIHIDLDTLQNLESFRDSLCVFPPKSVQLKKPFSIQPWLNSEQNVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGFGPQLKKRSVTWSYANDKDEGRSCEDIISTLRNGSAAESAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADEVEREEESESDDEVDEDPEDDDLVNPSRENQNPEQYDDTNTCSSNGKENLGHDVDLIQNEFDTDLPCFPENGSKDAECPSSVTGQPVACEDLNTGNLDEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGMANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRLKDDNIGKSDFPSLNGNKVETQYTYPVVEGNQSPLLDINISNVNNEASPSTAENQKGAPITQHLPMEKSSSIQDFCTGTGLDNPQTQAPPQYSKRSRSQLKSYIAHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGNWRLIDSEEAFDALLKSLDSRGIRESHLRIMLKKIENSFKGNVRKNTQCAKIGSRGEVSIKNEANETYPIPDHHAGSASPSSTLLDLNSGASEISSSFKIELGKSESEKKAAFRRYQDFQKWMWKECYNPSILCAMKYGIKRCKPQVDICDICLNPYFVEDFHCNSCHRTFPSNNGFNFSKHAFQCGEKFSKDTCVLEYSLPLRTRLLKVLLACMEVSVLSEAFGTVWTDNIRRHWGVKLSKSSSVEELLQILTLFERALRRDFLSSNFSTTDELLGSGNVSGNSAHASTDPESVAVLPWVPQTTAALSLRLFEFDSSISYVKLEKVEPCEEKEARQQVKLPSRYTPFKSNREVDPAEFDHDVFTRDKSAPNKIVRSGNKRGRGTNDQGRGKKLSKRMYNSKRDTGRRNVKVTENLSHKLKQQGRGTQGQGGGRGRRTVRKRRVEKRAVEDLLLGHTAPSHSSKCGRESLRSLDEEWDGEKASPMASPMTPVHIRVADNSAEEVESDDNAQAVEYDQGNWEVGYNGVPPNRWSRDMVVMSDEDADAFEDDNDNGNEIEENEEEEDSEADVMSEGSDGMANRVVNAGGSDSALSEDSSD. 1824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05048 1823 CDD homeodomain 49 98 IPR001356 GO:0003677
Seca5g05048 1823 MobiDBLite consensus disorder prediction 373 408 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1596 1712 - -
Seca5g05048 1823 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1188 1260 IPR028941 -
Seca5g05048 1823 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1007 1050 IPR028942 -
Seca5g05048 1823 Gene3D - 31 105 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 336 355 - -
Seca5g05048 1823 Pfam DDT domain 616 670 IPR018501 -
Seca5g05048 1823 ProSiteProfiles HARE-type HTH domain profile. 796 865 IPR007759 GO:0006355
Seca5g05048 1823 MobiDBLite consensus disorder prediction 926 946 - -
Seca5g05048 1823 SUPERFAMILY Homeodomain-like 34 103 IPR009057 -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 897 921 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1726 1823 - -
Seca5g05048 1823 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 32 1823 IPR044977 GO:0006357
Seca5g05048 1823 MobiDBLite consensus disorder prediction 452 501 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 23 53 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1608 1640 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 893 948 - -
Seca5g05048 1823 SMART testlast3 614 673 IPR018501 -
Seca5g05048 1823 Coils Coil 439 541 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1 56 - -
Seca5g05048 1823 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1692 1706 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 101 158 - -
Seca5g05048 1823 ProSiteProfiles DDT domain profile. 614 673 IPR018501 -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 308 417 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1145 1168 - -
Seca5g05048 1823 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Seca5g05048 1823 MobiDBLite consensus disorder prediction 135 149 - -
Seca5g05048 1823 MobiDBLite consensus disorder prediction 101 118 - -
Seca5g05048 1823 SMART HOX_1 46 108 IPR001356 GO:0003677
Seca5g05048 1823 MobiDBLite consensus disorder prediction 1767 1796 - -
Seca5g05048 1823 Pfam HB1, ASXL, restriction endonuclease HTH domain 796 864 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05048 Seca-Chr5 107688156 107699258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05048 40 1750 Homeobox Transcription Factor Family AT1G28420 47.579 0.0 1305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca5g05048 WSD 8.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05048 - - gmx:100777465 2614.72