Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05043 ATGCCTCCTCCCCTGTTTCCCCTGTTCCTCTTCCTCCTCCTCCTACCTGCCACCATTTCCGGCCTCAACCAAGAGGGTCTGTACCTCTACCAGTTCAAGCTCTCCGTGGACGACCCAGACGCATCTCTCTCCACGTGGAACAACCGTGACCCCACCCCCTGTAACTGGGCCGGCGTTACTTGCGACCCAACCAACACCACCGTCACCGAACTTAATCTCTCCAACGCCAACATCGGAGGCCCATTCCCCGCTTCCCTCCTCTGTCGCCTCACCAACCTCACCTCCATCATCCTCACAAACAACTCCATCAATTCCACTCTCCCTCTCGACATCTCCCTCTGTTCCTCCCTCATTCACCTTGACCTCTCTCAAAACCTCCTCACCGGTACACTCCCCCACACTCTATCTCTCCTTCCCAATCTCCGTCACCTCGATTTAACCGCTAACAACTTCTCCGGCTCCATCCCTGACTCCTTCGGAACCTTCCAGAGCCTCGAGGTCATCTCCCTCGTCTACAACCTTCTAGACTCCACCATACCTGCTTCCCTCGGCAACATCACCACACTCAAGATGCTTAACCTCTCTTACAACCCCTTTCTCCCCGGTCAGATCCCGCCGGAGCTTGGTAACCTCACTAACCTCGAGATCCTCTGGCTCAGTTCCTGTAACCTTGTAGGCGCCATCCCTGACTCCTTCGGGAATCTCAAGAAGCTTAAGGACTTGGACCTTGCGTTGAACAACCTCTACGGTTCAATTCCGAGTTCACTCACTCGGATGACGAGTTTGAAGCAGATTGAGTTGTATAACAACTCGTTGTCCGGTGAGTTTCCTCGTGGAATGTCGAACCTCACCGCGTTGAGGCTCATTGACGTGTCCATGAACCATCTAACAGGCGCCATTCCCGACGAGTTGTGCCGTTTGCCGTTGGAGAGTCTTAACCTCTACGAGAATCGGTTCACCGGCGAATTGCCGCCGAGCATAGCCAATTCTCCCAACCTCTATGAACTCAGGTTGTTTGGGAACTCGCTCTCCGGTGAGTTGCCGGAAAATCTTGGTAAGAATTCTCCGTTGAGGTGGCTTGACGTTTCCAGCAACAACTTCTCTGGTCGGATTCCGGCGACACTGTGTGATCACGGCGCGTTGGAGGAGGTTCTGATGATAGAGAACTCGTTCTCCGGGGAGATTCCGGCGAGTTTGGGAGCATGTCAGAGTTTGACGCGTGTCAGGTTTGGTTACAACAGGTTTTCCGGTGAAGTTCCGGCGGGTGTGTGGGGCCTTCCGCATGTGTATTTGCTTGAACTGGTTGATAACTCGTTTTCCGGTTCAATCGCCGGAACCATTGCTCGGGCGGGGAATCTGTCTCTGTTGATGGTGTCGAATAACAATTTCTCGGGTGCGATCCCTAAAGAGATTGGATGGTTGGAAAATCTTCAGGAATTTTCGGGTGGTGATAACAAGTTCAATGGTTCTCTGCCTGAGAGTATTGTGAATCTTGGGCAGCTTGGGACCCTTGATCTTCATAATAATAAGCTCTCTGGGGAACTTCCTAAAGGGATTCAATCTCTAAAGAAGCTCAACGAGTTGAATTTGGCTAATAATGAGATTGGTGGGAAAATCCCTGATGAAATTGGGAGTTTGTCTGTGCTTAATTTTCTTGATCTGTCTAATAACCAGTTTTCCGGAAATGTCCCTCTGGGCTTGCAGAATTTGAAGCTCAATCAGCTTAATTTGTCTTACAATCGGCTTTCTGGAAACATTCCCCCTCTGCTGGCTAAGGATATGTACAGGGATAGTTTTATGGGTAATCCTGGTTTGTGTGGGAATTTGAAAGGTTTGTGTGATGGCAGGGGTGAGGATAGGAGTGCCGGTTTTGTTTGGTTGCTTCGAACTATTTTCATAATTGCTACTTTGGTGTTTGTCATTGGGGTGGTTTGGTTCTACTTCAAGTACAGGAATTTCAAGAATGCTACAAGATCTATTGATAAATCCAAGTGGACATTGATGTCATTTCATAAACTGGGTTTTGGTGAAGATGAGATCTTGAACTGCCTCGATGAAGATAATGTGATAGGAAGTGGATCATCAGGGAAAGTCTACAAGGTTGTACTTAGCAATGGGGAAGCTGTTGCCGTGAAGAAGATATGGGGAGGGATCAGAAAGGAAATAGAGAGTGAAGACATTGAAAAGGGTCGGTTTCAAGACAATGCTTTTGATGCAGAGGTTGAAACTTTAGGCAAAATCAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGCACCACTAGGGACTGCAAGCTGTTGGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGATTTGCTGCATAGCAGTAAAGGAGGGTTGTTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTCCATAGAGATGTAAAATCTAATAACATCTTGTTGGATGGGGACTTCGGTGCAAGGGTGGCAGATTTTGGAGTGGCTAAGGTAGTAGATTCCACCGGCAAAGGAACTAAATCCATGTCCATCATAGCTGGGTCTTGTGGGTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATATAGTTTTGGTGTTGTCATACTTGAGCTGGTTACTGGAAGACGGCCGGTAGATCCTGAATTTGGGGAAAAAGATTTGGTTATGTGGACATGCACTACCTTGGATCAGAAAGGCGTGGACCATGTTCTTGACTCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACTAGTCCTCTTCCAATTAACAGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAAGTGGGAACAGAAAACCAAACGAAGCCTGCCAACAAAGATGGGAAGTTGTCTCCTTATTACTATGACGATGGATCAGATCATGGAAGTGTTGCTTAA 2994 0.4773 MPPPLFPLFLFLLLLPATISGLNQEGLYLYQFKLSVDDPDASLSTWNNRDPTPCNWAGVTCDPTNTTVTELNLSNANIGGPFPASLLCRLTNLTSIILTNNSINSTLPLDISLCSSLIHLDLSQNLLTGTLPHTLSLLPNLRHLDLTANNFSGSIPDSFGTFQSLEVISLVYNLLDSTIPASLGNITTLKMLNLSYNPFLPGQIPPELGNLTNLEILWLSSCNLVGAIPDSFGNLKKLKDLDLALNNLYGSIPSSLTRMTSLKQIELYNNSLSGEFPRGMSNLTALRLIDVSMNHLTGAIPDELCRLPLESLNLYENRFTGELPPSIANSPNLYELRLFGNSLSGELPENLGKNSPLRWLDVSSNNFSGRIPATLCDHGALEEVLMIENSFSGEIPASLGACQSLTRVRFGYNRFSGEVPAGVWGLPHVYLLELVDNSFSGSIAGTIARAGNLSLLMVSNNNFSGAIPKEIGWLENLQEFSGGDNKFNGSLPESIVNLGQLGTLDLHNNKLSGELPKGIQSLKKLNELNLANNEIGGKIPDEIGSLSVLNFLDLSNNQFSGNVPLGLQNLKLNQLNLSYNRLSGNIPPLLAKDMYRDSFMGNPGLCGNLKGLCDGRGEDRSAGFVWLLRTIFIIATLVFVIGVVWFYFKYRNFKNATRSIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSNGEAVAVKKIWGGIRKEIESEDIEKGRFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVDSTGKGTKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVMWTCTTLDQKGVDHVLDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKPANKDGKLSPYYYDDGSDHGSVA. 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05043 997 ProSiteProfiles Leucine-rich repeat profile. 571 593 IPR001611 GO:0005515
Seca5g05043 997 FunFam Receptor-like protein kinase HSL1 308 615 - -
Seca5g05043 997 SUPERFAMILY RNI-like 70 377 - -
Seca5g05043 997 FunFam Receptor-like protein kinase HSL1 668 771 - -
Seca5g05043 997 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 232 966 - -
Seca5g05043 997 Pfam Protein kinase domain 686 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05043 997 SMART LRR_typ_2 522 546 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 211 234 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 235 259 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 90 114 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 283 307 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 498 521 IPR003591 -
Seca5g05043 997 SMART LRR_typ_2 138 161 IPR003591 -
Seca5g05043 997 ProSiteProfiles Protein kinase domain profile. 684 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05043 997 Gene3D Ribonuclease Inhibitor 22 178 IPR032675 -
Seca5g05043 997 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Seca5g05043 997 Pfam Leucine rich repeat 213 272 IPR001611 GO:0005515
Seca5g05043 997 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 981 - -
Seca5g05043 997 SUPERFAMILY L domain-like 310 588 - -
Seca5g05043 997 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Seca5g05043 997 FunFam Leucine-rich receptor-like protein kinase family protein 204 302 - -
Seca5g05043 997 Gene3D Ribonuclease Inhibitor 179 308 IPR032675 -
Seca5g05043 997 MobiDBLite consensus disorder prediction 968 997 - -
Seca5g05043 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Seca5g05043 997 Gene3D Ribonuclease Inhibitor 309 615 IPR032675 -
Seca5g05043 997 Gene3D Transferase(Phosphotransferase) domain 1 772 989 - -
Seca5g05043 997 ProSitePatterns Protein kinases ATP-binding region signature. 690 713 IPR017441 GO:0005524
Seca5g05043 997 Gene3D Phosphorylase Kinase; domain 1 668 771 - -
Seca5g05043 997 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Seca5g05043 997 SMART serkin_6 684 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05043 997 SUPERFAMILY Protein kinase-like (PK-like) 680 964 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05043 Seca-Chr5 107642999 107646867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05043 18 997 Receptor kinase-like Gene Family AT1G28440 70.111 0.0 1419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca5g05043 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05043 - - gmx:100776936 1676.37