Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05040 ATGAGACGGTGCAATGACTCTGATGAGGAGGAGAGGGGCAATGAATCAATGACGCCTACTATTAGTATTACACCTACAAAAGCTGACATAAAACTCACAGAAGAAGTTCGAACCATTGAATGCCCCTCATGCGGCCATAATATTCAAGTCAAAGATCAGGGTGGAATTCATGACTTGCCGGGATTGCCAGCTGGAGTGAAGTTTGATCCGAATGATCAAGAAGTACTCGAGCATTTGGAGGCAAAAGTGATGTCTGATGTGCGCAAGATTCATCCCCTCATTGATCAGTTCATACCAACGCTTGAAGGGGAGAATGGAATCTGTTATACTCACCCAGAAAAACTACCAGGAGTTAGCAAAGATGGACAAATCCGGCACTTTTTTCATAGGCCTTCTAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGATTCACACAGATGAAGAAGGAAGTGAAACAAGATGGCACAAAACGGGGAAAACTAGAGCAGTATATGCTGCAGGTGGAGCTGTGAAAGGTTTTAAAAAGATATTAGTACTCTACACTAACTATGGCAGGCAAAAGAAGCCTGAGAAGACTAATTGGGTGATGCATCAATACCATCTTGGCAGTAATGAAGAAGAGAAAGATGGAGAATTAGTTGTCTCAAAGGTCTTCTACCAAACACAACCTAGACATTGTGGTATAACTATAAGGGATCATCCATATGAAAACATATTATTGAATCATGGAAGTGGGCATCATAATAACAGTACACTAATACCTAAAAATGCAGCTCCTTTAGATTGCTACAGTGTTGCTCCTTACATAAATTATGAGCATGTGGGTCATAATAGAGAAAGCTCCCCACAACTTATTCCAAACTTGGTTGTCCAAGGTGATGGCCCTTTTATTCGCTTAGGAATGGATGCAAACAGAGCAAGACTCGAGAGAAAGTAA 942 0.4098 MRRCNDSDEEERGNESMTPTISITPTKADIKLTEEVRTIECPSCGHNIQVKDQGGIHDLPGLPAGVKFDPNDQEVLEHLEAKVMSDVRKIHPLIDQFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKIHTDEEGSETRWHKTGKTRAVYAAGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRHCGITIRDHPYENILLNHGSGHHNNSTLIPKNAAPLDCYSVAPYINYEHVGHNRESSPQLIPNLVVQGDGPFIRLGMDANRARLERK. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05040 313 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 29 233 IPR044799 GO:0003700
Seca5g05040 313 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g05040 313 MobiDBLite consensus disorder prediction 1 15 - -
Seca5g05040 313 Gene3D NAC domain 71 226 IPR036093 GO:0003677|GO:0006355
Seca5g05040 313 ProSiteProfiles NAC domain profile. 62 222 IPR003441 GO:0003677|GO:0006355
Seca5g05040 313 SUPERFAMILY NAC domain 57 222 IPR036093 GO:0003677|GO:0006355
Seca5g05040 313 Pfam No apical meristem (NAM) protein 63 203 IPR003441 GO:0003677|GO:0006355
Seca5g05040 313 FunFam NAC domain-containing protein 73 71 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05040 Seca-Chr5 107612312 107615770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05040 1 309 NAC Transcription Factor Family AT1G28470 56.667 1.40e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca5g05040 NAM 1.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05040 - - gmx:100809389 489.574