Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05035 ATGGGGTTGATCGATCTCAACACTACAGAGGACGATGAAACTCCATCGTCTGGTGCTTCTTCGTCGTCCTCCTCCTCTCACTCGGGCATAAGCACTTCTGCTTCAGCCATGGTTACTCCTCCTCCTCCAGCTCCAGCTCCATCTTCCGTGTGCTTGGAGCTATGGCACGCGTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGAAGCGTTTTTGTGTACTTCCCACAAGGACACTTTGAACAGGCTCAGGATTTTCCGGTCACTGCCTATAATATCCCAACTCATGTGTTCTGTCGCGTTCTCGATGTCAAGCTCCACGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAACTTGCGGGAAGGGGAAATTGATGCTGATGGGGAAGAGGAGGATACTGAAGCTATGGTGAAGTCAACAACGCCCCATATGTTCTGCAAGACCCTGACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCTAAGGATCTACATGGCCTGGAATGGAGGTTTCGGCATATTTACAGGGGGCAGCCTCGGAGGCATTTGCTCACAACTGGATGGAGTGCTTTTGTGAACAAGAAGAAGCTTGTGTCTGGCGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGGGAACTGAGACTAGGGATTCGTAGGGCAGCTCAATTGAAAAGTCCCGGTTCCTTTGCAGCTCCATCTAGTCAGCATTTGAATCCTAGCACTGTCATGGATGTTGTTAATGCCTTATCTACAAGATGTGCATTTAGTGTTTGCTACAATCCAAGGGCCAGTTTGTCAGAATTCATTGTACCTGTCCAAAAATTCTTGAAGAGTCTCGATTGTTCTTATTCAGTTGGAATGAGGTTCAAGATGCGATTTGAAACTGAAGACGCTGCAGAGAGAAGATTCACTGGATTAATTGCTGGAATCAGTGATGCGGATCCTGTTAGATGGCCAGGATCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACATAGAAGCTGGTAGGCATAATAGGGTTTCTCCATGGGAAATTGAGCCATCCAGTTCTGCTCCCACTTCCCATAACTTGATGGCAGCAGGTTTGAAGAGGACTAGGATTGGATTAACTTCAGCAAAGATAGAATTTCCAGTTCCCAATGGAATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTTGATGGTATTGATGCTCAGCGTCCCCGATTGTATGAGCTAGGAAGGTGCTATCCTGGTTCAAACTGTCCTGGCATTGCTGTAACAGGAAATAATATCAGAATCCCACAAGTGACTTCTGATTTTTCCTGCAATGGCATAGGCTTTAGTGAATCTCTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCCACCATATGGAAGAGCCCTCCCTGTTGATGAGGCTCGTGGAAATGGTCACCTTGGACTCTTTGATGGTTATCAGCTGCTTAGCTCCAGAAATGGGTGGTCTGCACAGATGCATGACAATCCTTCACATTTGCATGCATCTGTTGCATCTGGGCAAGTGTCATCTCCGTCATCTGTGTTAATGTTCCAGCATGCAGTTAATCCAGTTTCAAACTCTGATTATAATAGTAAACGTAATCAAGAGAGGGATGGCAAAGTCTGTTACCAAGGTTCATATGCATCTGAAATGAAAGGTGGAACATTTGCACCTTCCTTATCTGACAAGCCTATTTTCTCTGGACAAGCTCATGAAGGTGCAAATTCTACTGGTATGCATAATTTTCATAATCAATTGGGCAGTTCAAGGTCTAATGATTCAGTGGCAACAGTGAGAGGCAGTCAAGAGCTGGTTTCCTCATGCAAAAATAGCTGCAGGCTGTTTGGTTTTTCATTAACTGAGGACACAGTCACACACATTGCAAATAAAGAGCAGCCCTCTACCATTACTTGTCAATTGAATTCTGGACCTTCCTTTACAAGAAGACTTGTTGAAGATGAATTCCATCCAGGCCATTCACTCAGGAGTAAGGGGGTTGGGAGTAACCGCACCAAAGGTGTATTGCAGTATTGA 2214 0.4603 MGLIDLNTTEDDETPSSGASSSSSSSHSGISTSASAMVTPPPPAPAPSSVCLELWHACAGPLISLPKKGSVFVYFPQGHFEQAQDFPVTAYNIPTHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQNLREGEIDADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSPGSFAAPSSQHLNPSTVMDVVNALSTRCAFSVCYNPRASLSEFIVPVQKFLKSLDCSYSVGMRFKMRFETEDAAERRFTGLIAGISDADPVRWPGSKWRCLLVRWDDIEAGRHNRVSPWEIEPSSSAPTSHNLMAAGLKRTRIGLTSAKIEFPVPNGIGTSDFGESLRFRKVLQGQEILGVNTPFDGIDAQRPRLYELGRCYPGSNCPGIAVTGNNIRIPQVTSDFSCNGIGFSESLRFQKVLQGQEILPSPPYGRALPVDEARGNGHLGLFDGYQLLSSRNGWSAQMHDNPSHLHASVASGQVSSPSSVLMFQHAVNPVSNSDYNSKRNQERDGKVCYQGSYASEMKGGTFAPSLSDKPIFSGQAHEGANSTGMHNFHNQLGSSRSNDSVATVRGSQELVSSCKNSCRLFGFSLTEDTVTHIANKEQPSTITCQLNSGPSFTRRLVEDEFHPGHSLRSKGVGSNRTKGVLQY. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05035 737 Coils Coil 125 145 - -
Seca5g05035 737 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Seca5g05035 737 Pfam Auxin response factor 285 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca5g05035 737 MobiDBLite consensus disorder prediction 9 37 - -
Seca5g05035 737 SMART B3_2 158 260 IPR003340 GO:0003677
Seca5g05035 737 Gene3D - 156 260 IPR015300 -
Seca5g05035 737 Gene3D - 321 394 - -
Seca5g05035 737 FunFam Auxin response factor 156 260 - -
Seca5g05035 737 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca5g05035 737 MobiDBLite consensus disorder prediction 717 737 - -
Seca5g05035 737 FunFam Auxin response factor 321 392 - -
Seca5g05035 737 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Seca5g05035 737 MobiDBLite consensus disorder prediction 1 43 - -
Seca5g05035 737 SUPERFAMILY DNA-binding pseudobarrel domain 151 275 IPR015300 -
Seca5g05035 737 CDD B3_DNA 156 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05035 Seca-Chr5 107576265 107582295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05035 48 512 B3 DNA Binding Superfamily AT5G60450 50.309 1.42e-145 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca5g05035 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05035 K14486 - gmx:100789906 1166.37