Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05023 ATGCTATGCTGTCTCTTAATTTCCTTGGATTTTCTCTGTATTAAATATTTTTCTCTTGACCACAGGCGTTTTGATAGGAATCAATTAAGCGGAGGAGTGCCTTCAAACTTGAACAATCTCGGAAAACTTAGCGAGCTCTATTTATCTCACAATCAAATGGATGGCTCTCTGCCGGATCTTACTGGAATGAATAGTCTCACCTATGTGGATCTGAGCGACAATAATTTCAATTCTTCTAATATTCCTTCATGGGTTACAAGTCTGCCAGATCTGACAACAGCGATACTGAAGGACAACAAGCTCAGTGGCACATTAAATCTTAGCAATGGCTACAGCAACAGTCTGCAACTCATTGATTTGGAGAATAATGATATAACCGACCTCAAGCCTAGAAACCAAAAATTTACTTTTGATTTGAGACTGGCTAATAACGAAATTTGTCTTGAAAATGGAGCTTCTGATGAGAGTTACTGCAAAGTGCACCAAATCATTCCCTCATATTCAACCCCACCAAATAATTGTGCAGCTCCATCTTGCAGTGACAGTCAGACTTTAAGCCCCAACTGTAAATGTGCATTTCCCTATACTGGAACTCTGTCATCCAGAGCTGTTAGTTTCTCAAACTATAGTAACTCAAGTTACTACAGACAAATTGAGCAGACTCTGCTGGACACTTTTAAAAAACAAAATGTTGCTGTGGATTCAGTTTCTCTTAGTAATCCCAGGAAGAATTCAACTAATGATAATTTTCAGTTGACTCTGGAGGTCTTCCCATCTCAAACTGACCGTTTCAATAGCACTGGAGTTTTAACCATTTCTTTTCTGCTTAGCAACCAAATTTACAAACCCCCAGCATTTTTCACCCCTTACGTCTTCAACGGTCTTAGTTATGAACACTTTGGAGGAGAACCTAAAGGATCAAAGTCAAAAAATACAGGGGTTATAGTTGGTGCAGTACTTGCTGTAGTGGTGTTTCTTGTACTAGCACTCCTTGCAGGGATATATGCCATCCGCCAAAAAAGAAGAGCAAAAAGATCTGCAGAGTTGAACCCTTTTGTAAATTGGGAACAGAACAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGGTGGTTTTCTTTTGAAGAGCTAAAAAAATACACCAATAACTTCTCAGAAGCCAATACTATTGGATCTGGCGGCTATGGAAAGGTTTACCAAGGTGTTCTTCCCTCTGGGGAGTTGGTTGCCATCAAACGGGCTGCACAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTTGTTAGTCTTGTGGGTTTCTGTTTTGAGAAGGGTGAACAAATGCTTGTGTATGAGTACATTCCAAATGGCACTTTAATGGATAGTCTTTCAGGTACAATCTCATTTCTCTGGACTTTGTCAATGCCTGGCACATTTCTTAACTAG 1467 0.3995 MLCCLLISLDFLCIKYFSLDHRRFDRNQLSGGVPSNLNNLGKLSELYLSHNQMDGSLPDLTGMNSLTYVDLSDNNFNSSNIPSWVTSLPDLTTAILKDNKLSGTLNLSNGYSNSLQLIDLENNDITDLKPRNQKFTFDLRLANNEICLENGASDESYCKVHQIIPSYSTPPNNCAAPSCSDSQTLSPNCKCAFPYTGTLSSRAVSFSNYSNSSYYRQIEQTLLDTFKKQNVAVDSVSLSNPRKNSTNDNFQLTLEVFPSQTDRFNSTGVLTISFLLSNQIYKPPAFFTPYVFNGLSYEHFGGEPKGSKSKNTGVIVGAVLAVVVFLVLALLAGIYAIRQKRRAKRSAELNPFVNWEQNKNSGTAPQLKGARWFSFEELKKYTNNFSEANTIGSGGYGKVYQGVLPSGELVAIKRAAQESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGTISFLWTLSMPGTFLN. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05023 488 SUPERFAMILY Protein kinase-like (PK-like) 364 475 IPR011009 -
Seca5g05023 488 Pfam Protein tyrosine and serine/threonine kinase 388 471 IPR001245 GO:0004672|GO:0006468
Seca5g05023 488 Gene3D Ribonuclease Inhibitor 13 170 IPR032675 -
Seca5g05023 488 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Seca5g05023 488 ProSiteProfiles Protein kinase domain profile. 385 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g05023 488 FunFam Leucine-rich repeat protein kinase family protein 352 460 - -
Seca5g05023 488 Gene3D Phosphorylase Kinase; domain 1 355 460 - -
Seca5g05023 488 SUPERFAMILY L domain-like 24 146 - -
Seca5g05023 488 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05023 Seca-Chr5 107479910 107482714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05023 23 479 Receptor kinase-like Gene Family AT5G49760 48.760 9.84e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca5g05023 PK_Tyr_Ser-Thr 1.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05023 - - mtr:11440804 671.003