Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05019 ATGGCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCTCTCATGTCATCTGCTTGCCATAGAAGCCCTTACACTTCAGCAGGTTGTGAGGAGAGAAGTCCTGAGCCAAAGCCAAGGTGGAACCCAAAACCAGAACAAATTCGCATACTGGAAGCAATATTCAACTCTGGGATGGTGAATCCTCCAAGAGATGAGATAAGGAAGATCAGAGCACAGTTGCAAGAGTATGGCCAAGTTGGTGATGCTAATGTCTTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCATCTCCAGAACTCAAAGAACGTGCAGAACTCAGAACCCCCACAAAACCCTCGACTCTCTCTCCCTCTTCCACAAATCACTGCACCTAATTCATCCTCATCTTCTTCCTCTGAGAAATCTTCCCCCAAAGAACTAATACCCACCAAGGTGTTTTCCATTAATTCCCCCACCGCCTCTGTCAACCAAACCTATTTTCAGACTGACACCACTACTCTTCTGCCACCACCACCACCACCTGAGAATTTCTTCTTCCCAGTGCAAGGAGTGGTGCCAAATACAGTGACATCACAAGGGTTTGGCTTCTCTGAACTTTCCAATGTGGTTCAAGCTCAATCACATAACTCTGGTCCTTGCACTAGTCTTTTGCTTAGTGAGATCATGAGCCATAATGAAGCCTCGAAGAAAGACCAAGATCAAGAGAAGTCTGTGAAAATAATGCACCAAACTCCACAGCTTAATTTCTGTGTCACTCCCACAAGTACTGTACTTGTACCTCCCACCCCTTCCACCACCATTACTGTTCCATCCCCCATCATTTCTCAAGTTCAAGGCATTGGAGATCCAGGTGTTCCGGCGAGATCAACGGTTTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAACGTGCGTGAGGCCTTTGGTGAAGATGCTGTGCTTATCCATGCCACTGGTCAACCTGTTCTTACTAACCAATGGGGTGTGACCCTCCAATCACTCCACCATGGTGCATCTTATTATCTGATATAG 1104 0.4692 MASNRHWPSMFKSKPCNPHHQWQHDINSSLMSSACHRSPYTSAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNVQNSEPPQNPRLSLPLPQITAPNSSSSSSSEKSSPKELIPTKVFSINSPTASVNQTYFQTDTTTLLPPPPPPENFFFPVQGVVPNTVTSQGFGFSELSNVVQAQSHNSGPCTSLLLSEIMSHNEASKKDQDQEKSVKIMHQTPQLNFCVTPTSTVLVPPTPSTTITVPSPIISQVQGIGDPGVPARSTVFINDVAFEVAVGPFNVREAFGEDAVLIHATGQPVLTNQWGVTLQSLHHGASYYLI. 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05019 367 FunFam WUSCHEL-related homeobox 11 53 120 - -
Seca5g05019 367 Gene3D - 53 119 - -
Seca5g05019 367 CDD homeodomain 52 114 IPR001356 GO:0003677
Seca5g05019 367 SMART HOX_1 51 118 IPR001356 GO:0003677
Seca5g05019 367 MobiDBLite consensus disorder prediction 1 22 - -
Seca5g05019 367 MobiDBLite consensus disorder prediction 37 60 - -
Seca5g05019 367 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Seca5g05019 367 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Seca5g05019 367 MobiDBLite consensus disorder prediction 113 160 - -
Seca5g05019 367 PANTHER WUSCHEL-RELATED HOMEOBOX 9 2 367 IPR044557 GO:0003700|GO:0050793
Seca5g05019 367 MobiDBLite consensus disorder prediction 120 160 - -
Seca5g05019 367 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05019 Seca-Chr5 107459223 107462383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05019 2 367 Wox Gene Family AT2G33880 46.517 1.20e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca5g05019 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05019 - - aprc:113852083 537.339