Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05018 ATGGTTTTATTTTCCCAATCCCAAACAGAATTACCCTTGAATGAGGATGACTCACAGGACATGGTCATCTACCAAGTTCTAAACGAGGCAAATGCTCTGAGCAACACATTTCTACCACAGAGGAACCAAACCCTCAGTGGCTTAGAAGCCACAAAGACCATCACGAAGAAGCACTACAGAGGGGTGAGGCGCCGTCCCTGGGGGAAGTACGCGGCGGAGATTCGTGACTCGACACGTCATGGAGCCAGGATATGGCTTGGAACATTCCAAACAGCAGAAGAAGCTGCCATGGCATATGATAGAGCTGCTTTCAGGATGAGAGGTGCTAAGGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTGCTGCTTCCATGCAGATGGAGGATTTGTCTTCTAAGCATGATTTGAATACTAATCAGGATTCTGATTCAAGTGCTAGCAGCTCTTGCACCACTTCTACTTCCACTTCCAATTGGGTAAATAGGTCTCAGTTTGAAAGCACAAGTAGCCCGGGCAATTAG 522 0.4732 MVLFSQSQTELPLNEDDSQDMVIYQVLNEANALSNTFLPQRNQTLSGLEATKTITKKHYRGVRRRPWGKYAAEIRDSTRHGARIWLGTFQTAEEAAMAYDRAAFRMRGAKALLNFPAEVVAAASMQMEDLSSKHDLNTNQDSDSSASSSCTTSTSTSNWVNRSQFESTSSPGN. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05018 173 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 FunFam Ethylene-responsive transcription factor 2 57 118 - -
Seca5g05018 173 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 PANTHER DNA-BINDING DOMAIN 49 152 IPR044808 GO:0003700|GO:0009873
Seca5g05018 173 Gene3D AP2/ERF domain 57 118 IPR036955 GO:0003700|GO:0006355
Seca5g05018 173 MobiDBLite consensus disorder prediction 134 173 - -
Seca5g05018 173 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
Seca5g05018 173 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05018 Seca-Chr5 107432718 107433239 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05018 4 119 AP2-EREBP Transcription Factor Family AT4G17500 47.586 2.95e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g05018 AP2 4.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05018 K13433 - gmx:100811533 202.986