Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05017 ATGGATATTCATAATAATCATCATGCAACTTCTGAAGGGATTCTTGAGAATGTATGGGCTAAAATTATCAGCACTGATAGAGCAGTTGATGCAGCAGAACCTTCTAACTCCTGGGAAGAACTGCCTAGTCTTGATGGAAGAGATGGATCTATGGAAATTCTGCAAAGGCTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAGGTTTTAAATGGTATTCTACCTACTACAAGCAATACAGAAGATTCTGCTGACAATAAAAATTTGGAAACTGGAAGTGCTAATGAATCCAATATGAAGGAAGAAGATGGAGCTGTGAGAAGAGAGAAGGCAGTAGTTCCAAGACACTACAGGGGAGTGAGAAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCAAAGAAAGGTGCTAGAATTTGGCTTGGCACATTTGATACAGCTGAAGATGCAGCTTTAGCTTATGACAAGGCTGCTTTGAGAATTAGAGGCCCAAAGGCATACCTCAATTTCCCACTTGAGAGAGTCACAAACGCTTTAGGATGTGACCAGAAACAGAAAGGGATTGATCTTACTACCTGTGCTTGTACAACTTGCACACACATTGGGAACACAGGAAATTTTTTCAATTCCCGGAAGAGAGGATCAAGGGATGGGGAAGAATTTGTTGATTTGATGAACGAACAACCTGCAACAAAAAAGATGACAGGTTTGGAAAACATGCTAGAAAATGAACTAGATGTTTTTGTATTCCAGGACCTAGGAAGTGATTACTTGGACAGTTTGCTGTCTTCATTTTGA 822 0.4063 MDIHNNHHATSEGILENVWAKIISTDRAVDAAEPSNSWEELPSLDGRDGSMEILQRLPSLGRWISMGADFWEEVLNGILPTTSNTEDSADNKNLETGSANESNMKEEDGAVRREKAVVPRHYRGVRRRPWGKYAAEIRDSSKKGARIWLGTFDTAEDAALAYDKAALRIRGPKAYLNFPLERVTNALGCDQKQKGIDLTTCACTTCTHIGNTGNFFNSRKRGSRDGEEFVDLMNEQPATKKMTGLENMLENELDVFVFQDLGSDYLDSLLSSF. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05017 273 MobiDBLite consensus disorder prediction 81 113 - -
Seca5g05017 273 FunFam Ethylene-responsive transcription factor 2 120 181 - -
Seca5g05017 273 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 PANTHER DNA-BINDING DOMAIN 92 237 IPR044808 GO:0003700|GO:0009873
Seca5g05017 273 MobiDBLite consensus disorder prediction 81 100 - -
Seca5g05017 273 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 Gene3D AP2/ERF domain 120 181 IPR036955 GO:0003700|GO:0006355
Seca5g05017 273 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Seca5g05017 273 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05017 Seca-Chr5 107426943 107427764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05017 14 273 AP2-EREBP Transcription Factor Family AT4G18450 37.061 1.55e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g05017 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05017 - - gmx:112999553 350.517