Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g05012 | ATGGATCAAGACAGAAATCCTTGGGATATTTGCTCGGAGAAAATCGAGGATTGCTTGGTTTTTACAAGTGGGTGGCGGCAATTTGCCATGGATAAATGTTTAGAAGAAAGGGACTTTTTGGTTTTTGAGTATGATGGCAAGTCGATGTTTTATGTGAAGATCTTTTCCAAAAGTAGATGCAGGAAAGAAGCTGAAAATCATGGAAAAGTTGTCCCCATTGTGATTTTGGAAGAAAATTCTGCTTAG | 246 | 0.3821 | MDQDRNPWDICSEKIEDCLVFTSGWRQFAMDKCLEERDFLVFEYDGKSMFYVKIFSKSRCRKEAENHGKVVPIVILEENSA. | 82 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g05012 | 81 | CDD | B3_DNA | 1 | 56 | IPR003340 | GO:0003677 | |
Seca5g05012 | 81 | SUPERFAMILY | DNA-binding pseudobarrel domain | 1 | 60 | IPR015300 | - | |
Seca5g05012 | 81 | Gene3D | - | 1 | 60 | IPR015300 | - | |
Seca5g05012 | 81 | ProSiteProfiles | B3 DNA-binding domain profile. | 1 | 58 | IPR003340 | GO:0003677 | |
Seca5g05012 | 81 | PANTHER | B3 DOMAIN-CONTAINING | 4 | 64 | - | - | |
Seca5g05012 | 81 | Pfam | B3 DNA binding domain | 2 | 57 | IPR003340 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g05012 | Seca-Chr5 | 107391858 | 107392103 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g05012 | 18 | 64 | B3 DNA Binding Superfamily | AT5G66980 | 53.191 | 1.89e-11 | 56.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Seca5g05012 | B3 | 1.8e-10 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g05012 | - | - | lang:109328674 | 110.153 |