Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05012 ATGGATCAAGACAGAAATCCTTGGGATATTTGCTCGGAGAAAATCGAGGATTGCTTGGTTTTTACAAGTGGGTGGCGGCAATTTGCCATGGATAAATGTTTAGAAGAAAGGGACTTTTTGGTTTTTGAGTATGATGGCAAGTCGATGTTTTATGTGAAGATCTTTTCCAAAAGTAGATGCAGGAAAGAAGCTGAAAATCATGGAAAAGTTGTCCCCATTGTGATTTTGGAAGAAAATTCTGCTTAG 246 0.3821 MDQDRNPWDICSEKIEDCLVFTSGWRQFAMDKCLEERDFLVFEYDGKSMFYVKIFSKSRCRKEAENHGKVVPIVILEENSA. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05012 81 CDD B3_DNA 1 56 IPR003340 GO:0003677
Seca5g05012 81 SUPERFAMILY DNA-binding pseudobarrel domain 1 60 IPR015300 -
Seca5g05012 81 Gene3D - 1 60 IPR015300 -
Seca5g05012 81 ProSiteProfiles B3 DNA-binding domain profile. 1 58 IPR003340 GO:0003677
Seca5g05012 81 PANTHER B3 DOMAIN-CONTAINING 4 64 - -
Seca5g05012 81 Pfam B3 DNA binding domain 2 57 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05012 Seca-Chr5 107391858 107392103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05012 18 64 B3 DNA Binding Superfamily AT5G66980 53.191 1.89e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca5g05012 B3 1.8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05012 - - lang:109328674 110.153