Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05011 ATGAATTTCTATGTCCAAACTTCAAAAGCAGTTCCAAGCTTTTTGCTTAGGCTTCTCCTATTCCATTGCCTTATAGGAGCCCAGGCAGCTCAAAATACAAGTGTTGGTGTGGTCATTGATGTCAATTCTGAAACGGGAAAACAACAAAGAAGAGCCATGGAAATTGCAGCTCAAAATTTCAATAATCATTCTAACACTCAAAACATAGTCCTCTTCTTCCGTGACTCTGGTACAAACCCATTACAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAGGAGAAAGTTAAAGTCATTATTGGCATGGAGACATGGCAAGAAGCAGCTCTGGTTGCTGACTTAGGAACCAAAGCTCAAGTACCAATTATTTCATTTTCTGCTCCTCCAGTTATAGCTATATATGAAGATAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTTAACTCCCAGATTGAGTACCGATTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGGCTGTTCTTGATGAATTGCTGAAGTTGTTGCCACTTAAATCTCGTGTTTTTATTGTACTTCAAGCATCATTACCTATGAAAGTTGGATTCTTGGAGAAAGACTCAGCATGGATTATCAATGAAGGGATTACAAGTATGTTGGACTCTGTCAATAAATCTGTTTTATCCTCTATGCAAGGTACTTTGGGAATCAAAACCTACTATTCTACAAGTTCTAGTGCTTATATTCAGTTGCAGGAAAACTTCAAAGCTAAGCATACAGAAACAGTTGGGTCTAAACCAGGATCAGATGCCCTACTAGCTTATGATAGCATCACAGTTGTCACAAAGGCCTTGGAGAAAATGAATACCAATTCTAGTAGCTCAAAGGTGTTCTTGGAGGAAATGTTGCCAGGAGGCCTAAGTTCTGTGGATCCTCAACCTCCTAATGGATGGAGAGTACCTACCAATGAAAACCCTTTAAAAGTTGCAATTCCTATGAACCCTGCTTTTGATAGTTTTTTAAAGAAAGACTCTCCGAACACTGAGTCGGGCTTATCACTCATATTTCCAGCAGAGACTGACGGGTCAGCATGGTTGTTTACGAAACCATTCAGCTGGGAAATGTGGATTGCAACTATTGCCATCCTCATCTACACAACGTTCATCATTTGGTTCCTGGAGCATCACCTCAACCCAGATTTTGGGCGTGGATCGTTGAAAACTCAGATCAGCACCTCACTTTGGTTTGCACTTAATTCTCTATATTTTGCTCATAAGGAGAACATAAACAGAAACTCTGCACGAGTAGTAGTTGGCGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAGCCTTTCTTCATTGCTTACTGTCAAACGGTTGAAGTCTGGAAGAGACATTGAGTGGCTTAAACAAAACAGCTTATCAGTTGGTTGTGATAACAGCAGTGCCTTTGTAAAAAACTACTTGGTCAACGTAGTAGAGGTTGATGGAGAACATGACATTGTGGATAAATTCAAGAACAAAAGAATTTCTGCTCTCTTTCTTGAGACCCCATATGAGAAGGTTTTCTTGAACAAGTACTGCAATGATTACACTGCAATTACAGCTGCCTATAAATTTGGAGGAATGGGATTTTCAAACAACTCAACATCTCCGGAGACTGAGAGCCTGACTCTAGACAAGTTTTGGGGTCTATATATCATATGTGCTGCCACTTCCACCATCTGCTTATTGCGAGCCTTATGGAAGAATTACCTCCATAACCGTAACCATTGCCATCATGAAGAGGGAGTTCAAGTTCAAGTTCAAGATCAAGGGAATGTAACCGCTGGTGATAATAGTGTTTGGAAGAAGCCATTGAGAATGAACACAGGCTTTTACAATGGGAATCCCAAAACTATAAATAGAGCTGCAACTTTTGGTGGAAGTAGAACACAGAGTTTACGTCGTCGAAATTCTTCAAAGTGGCCGAGTATAAGCTTTTCTGATGAACTCAGTCATCAACATCGCTCCAAATCAACTGTCATAGAAATAATTAACCCAGATGAGGCTACCACTGCAAACAACAAAGTTATATCTATTGGGGCCATCATTGATGTTAACTCTCGTATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGAACTATAAGTTGGCTCTCCATTTTCGGAACTCCACTAAGGATCCCCTCAGAGCCATCACTCTTGCTGGAGAGATGATTAAAATGCAAAAGGTTCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTTTAGTGGCTGAAATAGGAAGCCAAGCTCAAGTTCCTACAATATCCTTTGCGGAACCTACAGTTACCCCGCCATTGATGACAGTTCGATGGCCTTTTTTGGTGAGACTGACTAACAATGGAACGGCATATATAAAATGCATTGCAGATATAGTGCAAGCTTTTAGATGGCAGAGAGTAGTAGCCATCTATGAAGATGATGGGTATGGTGGAGATTATGGGATGTTAGCACTGCTATCTGAGACCCTCCAAGATGTGGGTTCAATAATTGAGTACCGCTTAGATCCTGGAGAGCTAGTACGTAAAGAGCTGCTTAAGTTAATGCAAACACAATCTCGAGTGTTCATTGTGCTTCAATCATCATTAGAAATGGTGATTCATTTGTTCAAAGAAGCTTCAAAAAAGGGACTAGTGAATAGAGAATCTGTTTGGATAATCCCAGAGAGCATAAGAGCTTTAGGAATCAAGACCTACTACTCCGAAAGGAGCAGCCAGTATCAAAATTTTGAGGCTGAGTTCCGGAGAACATTTTGGTCAAAGAATCCAGAGGAAGATAACCGCTACCCAGGATTTTATGCTCTGCAAGCATATGATGCCATTGAAATTGTTGCTCAAGCAGTAGACAGAATGACAAGTAGAAACAATAGAAATCCAAAGACTTCACTGATGAGAGAAATTCAGTCTAGCAGTTTTCTTGTAAACGTGGTTGGGAAGAGTTACCAGGAATTATGCTTTTGGACTCAAAAACATGGTTTCACCACAAGCCTCCCTACAGGACAAGGTGGAAACAATGTTGCTGGAAATACAAAATGTTTCAAGGGTGTGCGTTGGCCTGGGGATTTGCACCGCGATCCAAAGGGCTGGAACATGCCTACCAAACAAAAACCATTGCAAATCGCAGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAGTATGGCCAGAATCAAAATCCTGTAAAATACACTGGATTCTGCATTGAAATTTTTGAGCATGTAGTGAAACTTTTGGGGTACGATCTGCCGTTTCAGTATCACCCCATCGATGGGACCTATAATGACTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGACATGACCATACTGGAGGAAAGATTGCAGTATGTGGATTTTACGGTGCCATATGCAGAATCAGGATTGTCAATAATAGTTCCAGCAAAGTCTGAAGAGTCAGCATGGATGTTTATGAAGCCCTTTACCTGGGAATTGTGGATGGTTACAGGTGTCATCTTGTTTTACACAATGTTAGTAGTTTGGTATCTTGAGAGAGAACCCAATCCAGAGGGAAAAAATGTACAGCAACTTAACTCGAGTGGTGATGGTCTCCTGGCTCTTTCTAGTTTTGATTCTTAA 3723 0.4085 MNFYVQTSKAVPSFLLRLLLFHCLIGAQAAQNTSVGVVIDVNSETGKQQRRAMEIAAQNFNNHSNTQNIVLFFRDSGTNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGTKAQVPIISFSAPPVIAIYEDNPYSGDSGMLSLFSEALQKVNSQIEYRLVLPSFTSLSDPKGAVLDELLKLLPLKSRVFIVLQASLPMKVGFLEKDSAWIINEGITSMLDSVNKSVLSSMQGTLGIKTYYSTSSSAYIQLQENFKAKHTETVGSKPGSDALLAYDSITVVTKALEKMNTNSSSSKVFLEEMLPGGLSSVDPQPPNGWRVPTNENPLKVAIPMNPAFDSFLKKDSPNTESGLSLIFPAETDGSAWLFTKPFSWEMWIATIAILIYTTFIIWFLEHHLNPDFGRGSLKTQISTSLWFALNSLYFAHKENINRNSARVVVGVWLFLVFVLTSSYTASLSSLLTVKRLKSGRDIEWLKQNSLSVGCDNSSAFVKNYLVNVVEVDGEHDIVDKFKNKRISALFLETPYEKVFLNKYCNDYTAITAAYKFGGMGFSNNSTSPETESLTLDKFWGLYIICAATSTICLLRALWKNYLHNRNHCHHEEGVQVQVQDQGNVTAGDNSVWKKPLRMNTGFYNGNPKTINRAATFGGSRTQSLRRRNSSKWPSISFSDELSHQHRSKSTVIEIINPDEATTANNKVISIGAIIDVNSRIGKEQQVAMDIAARSYNSTSKNYKLALHFRNSTKDPLRAITLAGEMIKMQKVQVIIGMHTWPEAALVAEIGSQAQVPTISFAEPTVTPPLMTVRWPFLVRLTNNGTAYIKCIADIVQAFRWQRVVAIYEDDGYGGDYGMLALLSETLQDVGSIIEYRLDPGELVRKELLKLMQTQSRVFIVLQSSLEMVIHLFKEASKKGLVNRESVWIIPESIRALGIKTYYSERSSQYQNFEAEFRRTFWSKNPEEDNRYPGFYALQAYDAIEIVAQAVDRMTSRNNRNPKTSLMREIQSSSFLVNVVGKSYQELCFWTQKHGFTTSLPTGQGGNNVAGNTKCFKGVRWPGDLHRDPKGWNMPTKQKPLQIAVRSRTSFSKFVKVEYGQNQNPVKYTGFCIEIFEHVVKLLGYDLPFQYHPIDGTYNDLVQLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSIIVPAKSEESAWMFMKPFTWELWMVTGVILFYTMLVVWYLEREPNPEGKNVQQLNSSGDGLLALSSFDS. 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05011 1240 SUPERFAMILY Periplasmic binding protein-like II 1053 1236 - -
Seca5g05011 1240 SMART GluR_14 1074 1237 IPR001320 GO:0015276|GO:0016020
Seca5g05011 1240 Gene3D - 365 502 - -
Seca5g05011 1240 Gene3D - 1182 1233 - -
Seca5g05011 1240 Gene3D - 1070 1181 - -
Seca5g05011 1240 Pfam Receptor family ligand binding region 718 1007 IPR001828 -
Seca5g05011 1240 Gene3D - 823 967 - -
Seca5g05011 1240 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 300 IPR015683 -
Seca5g05011 1240 FunFam Glutamate receptor 820 963 - -
Seca5g05011 1240 CDD PBP1_GABAb_receptor_plant 702 1032 IPR044440 -
Seca5g05011 1240 FunFam Glutamate receptor 368 499 - -
Seca5g05011 1240 Pfam Bacterial extracellular solute-binding proteins, family 3 1098 1178 IPR001638 -
Seca5g05011 1240 Pfam Ligand-gated ion channel 376 580 IPR001320 GO:0015276|GO:0016020
Seca5g05011 1240 FunFam Glutamate receptor 1072 1183 - -
Seca5g05011 1240 Gene3D - 25 127 - -
Seca5g05011 1240 Pfam Periplasmic binding protein 43 143 IPR028081 -
Seca5g05011 1240 SUPERFAMILY Periplasmic binding protein-like I 696 1063 IPR028082 -
Seca5g05011 1240 SUPERFAMILY Periplasmic binding protein-like I 25 296 IPR028082 -
Seca5g05011 1240 Gene3D - 695 822 - -
Seca5g05011 1240 Gene3D - 128 267 - -
Seca5g05011 1240 SUPERFAMILY Periplasmic binding protein-like II 350 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05011 Seca-Chr5 107371031 107385899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05011 350 600 Ion Channels AT2G29120 31.270 1.65e-34 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05011 - - gmx:100818619 830.861