Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05008 ATGGGGTCTGAAGACAAAGATGGTGAACAACACTCACTTGGTATAGGCTTTAAGGTTATGCTGGCTGCAGCTTTCTCTTTATTTGGCATAGTCTTGTTCACTATATTCCTCCTTTTTTGTGCAAAATATCTCATAAGGCGCCAACAGAGAAGACGTCAAATTCACCTTCTTAATCAGATCAACATTCAAATTGCACCAATTGATGTGAGTTCAGTGGAGCCACCCAATTGTGGCCTTCACCCTTTGATCATAGCCTCACTGCCTAAACTACTGTACAACCAAACGGACCACTTCAGACAATGTGAAGAAGGAGCTACAGAGTGCTCTGTTTGCTTAGCCACTATTCTGGAAGATGCAACTATTAGGTTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAGTTCTAACACCACATGCCCAATTTGCCGCACCGTGGCTGAACCCAGGGTCCAGGTCCAACCCACAGCACCACCTGTAGACGATGAGCCACAAGATGGTAGTGAATTGGGGAAGGTGGGATGTTCAGGCTTGAGAATAGGATCTTTTCATAGAATGGAATAA 582 0.433 MGSEDKDGEQHSLGIGFKVMLAAAFSLFGIVLFTIFLLFCAKYLIRRQQRRRQIHLLNQINIQIAPIDVSSVEPPNCGLHPLIIASLPKLLYNQTDHFRQCEEGATECSVCLATILEDATIRLLPNCKHIFHVDCVDKWFSSNTTCPICRTVAEPRVQVQPTAPPVDDEPQDGSELGKVGCSGLRIGSFHRME. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05008 193 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca5g05008 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Seca5g05008 193 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 163 IPR045899 -
Seca5g05008 193 Pfam Ring finger domain 107 150 IPR001841 -
Seca5g05008 193 SMART ring_2 108 149 IPR001841 -
Seca5g05008 193 SUPERFAMILY RING/U-box 86 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05008 Seca-Chr5 107349246 107350153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05008 1 173 C3H Transcription Factor Family AT2G42360 38.919 3.84e-33 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05008 K19038 - gmx:100786701 259.225