Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g05004 ATGACAATGATCAAAAGCACAGAGCGCACTATCATCTTCCCTTCTCACCCTCCCTTCCTTCACGACCACTCCCTCCCTCTCTCCCACCTCGACACCGATCGCAACCTCCACCTCACCTTCCGCTACGTCCGCGCTTACGTCGCCACCGCCACAACCTCCCTCCAAGATGATCCCTTCCACGTCATCTCTTCCTCCCTCTCCCAAGCCCTCCTTCACTACTACCCACTCGCCGGCACCCTTCGCCACCGCCAAGACCAACACCGCCGCCTCGAATTATGGTGCGCCGCCGGCCAAGGCGTCCCTCTCATCCGTGCCACCGTCGACTTCAGCCTCGATTCCGTGAATTACCTCGACGACCCTGCCTCCCCTTTCGTCGAACAGCTTGTGCCCGACCCGAAACCCGAAGAGGGAATGGAGCACCCGTGCATTCTTCAGCTGACGGTGTTCAAGTGCGGCGGGTTCACTCTCGGGGCGGCCATGAACCACGCCCTGTGCGACGGACTTGGAGGGACTCTGTTCTTCAACGCGGTGGCTGAGTTGGCTCGCGGGTCGACCCGAATAACCGTGGAGCCGGTGTGGGATCGGGAGAGGTTGTTGGGTCCCAGAGACCCGCCCCGAGTGGATTCACCTTTGATAAGGGAGTTTTTGCGTTTGGATAAGGGGTATTTGCCTTACAATGAGGACATTGGTGTGGTTGTGAGAGAGTGCTTTCATGTGAAGGATGAGTGCTTGGAAAAGTTCAAGAAGTCCTTGTTTGATCAATCTGGGTTGAACTTCACCACTTTTGAGGCTCTTGGTGCCTACATTTGGAGGTCCAAGGTGAGAGGCTCAGGAGTGCAGGGTAATGAGAAGGTTAAGTTTGCATATTCAATTAATATAAGGAGACTAGTGAAGCCAGCACTGCCTGCTGGATATTGGGGTAATGGTTGTGTTCCAATGTATGTGCAACTGAGTGCCAAAGATTTGATAGAGCAACCCATTTGGGAAACAGCAGAGCTAATAAAAAAGAGTAAAAGTAATGTTACTGATGAGTATGTTCACTCCTTCATCGATTATCAAGAGCTGCATTTTGCTGATGGGATCACAGCAGGTAAAAGGGTGAGTGGGTTCACAGATTGGAGACACTTAGGCCATTCAACTGTGGACTTTGGGTGGGGAGGCCCGGTTACTGTTTTGCCACTTGGAAGGAACTTGCTTGGGAGTGTTGAGCCTTGCTTCTTTTTGCCTTATTCAACAGCCACTGCAGGGAAGAAGGAAGGGTTCAAGGTTTTGGTGACCTTGGCAGAGGCTGCGTTGCCTGCTTTCAGAGAAGATATGCAAGTGTTTTGCCAGTAG 1335 0.5266 MTMIKSTERTIIFPSHPPFLHDHSLPLSHLDTDRNLHLTFRYVRAYVATATTSLQDDPFHVISSSLSQALLHYYPLAGTLRHRQDQHRRLELWCAAGQGVPLIRATVDFSLDSVNYLDDPASPFVEQLVPDPKPEEGMEHPCILQLTVFKCGGFTLGAAMNHALCDGLGGTLFFNAVAELARGSTRITVEPVWDRERLLGPRDPPRVDSPLIREFLRLDKGYLPYNEDIGVVVRECFHVKDECLEKFKKSLFDQSGLNFTTFEALGAYIWRSKVRGSGVQGNEKVKFAYSINIRRLVKPALPAGYWGNGCVPMYVQLSAKDLIEQPIWETAELIKKSKSNVTDEYVHSFIDYQELHFADGITAGKRVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCFFLPYSTATAGKKEGFKVLVTLAEAALPAFREDMQVFCQ. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g05004 444 Pfam Transferase family 3 440 - -
Seca5g05004 444 Gene3D - 229 439 IPR023213 -
Seca5g05004 444 Gene3D - 1 214 IPR023213 -
Seca5g05004 444 PANTHER ACYL TRANSFERASE 4 4 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g05004 Seca-Chr5 107325908 107328033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g05004 57 395 Monolignol Biosynthesis Gene Families AT5G48930 29.972 1.49e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g05004 - - gmx:100817021 736.102