Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04982 ATGGAATTGGGGAAGAAGCGAAAGATCGAAGACAATGGCGACTCCAATTGTGCATCACCACCCTCCCTTGCTGCAGAAGAAATACATAAGATCCTCGTGCATTTCACCCAAGACCAGCTCCTCCACATTGTTAAATTCGCAGCGCTGAATCACCGTGATGTTCTTGACGCTGTTCGGTCCGTTGCTAATAGCGACAGCACCTTTCGAAAGCTCTTCGTCCGCGGCCTCGGTGGGTACACCACCAACGCCGCCCTCCATGCCGCATTCTCTTCCTTTGGGCCGATCGAGGAGGCTGTTATCATCTTCGACAAAGAGACCGGTAGGTCCAAAGGGTACGGGTTCGTGACGTTCAGGCACGTGGACGGTGCCGTTTTGGCGCTAAAGGAGCCGAGCAAGAAAATCAATGGGAGAATGGCGTTTGCGCAACTTGCTTATTTTGGGGTTTGGAGGAGTGAGAGCAGTGTTCGGGAGAGAAAGATCTTTATTGGGAACGTGTCGTTTGATATTTCAGCGGAGAGGCTATTGAGTTATTTTGAGAGATATGGGGAGGTGGAAGAAGGGCCTCTTGGGTTTGAAAGAGTGGATGGAAAGCCCAAAGGCTTTGCTTTCATTGTGTACAAGTCCAAGAACGGTGCAAGGGAGGCACTCCTTCACCCTACTAAGGTAATTGATGGCCATCAAGTGCATTGCAGCAGTCTTCTTCGTTTGGCAATCCACCCCAAGGAATGTTCCAAGGCATGTCGCCTTATTACTGATCGAGGTTTGCATGTGATGGCTTCGTGGGGGCTAGCTAGTGCTTTAATTGGTTGTGCTGATTTTGTGCATTCAGACAGTGATATCTTTGGTTTTGGTTACATGGACTGGTGTAATTTTGCTACTGCTTCGCTACCCCCGCTTCTATATGTTTTGTGGTTCATTTGTGAGGTATTAGTGCAAGCATATGCTGCGCATAACCTCATGTAA 963 0.4891 MELGKKRKIEDNGDSNCASPPSLAAEEIHKILVHFTQDQLLHIVKFAALNHRDVLDAVRSVANSDSTFRKLFVRGLGGYTTNAALHAAFSSFGPIEEAVIIFDKETGRSKGYGFVTFRHVDGAVLALKEPSKKINGRMAFAQLAYFGVWRSESSVRERKIFIGNVSFDISAERLLSYFERYGEVEEGPLGFERVDGKPKGFAFIVYKSKNGAREALLHPTKVIDGHQVHCSSLLRLAIHPKECSKACRLITDRGLHVMASWGLASALIGCADFVHSDSDIFGFGYMDWCNFATASLPPLLYVLWFICEVLVQAYAAHNLM. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04982 320 SMART rrm1_1 70 142 IPR000504 GO:0003723
Seca5g04982 320 SMART rrm1_1 159 231 IPR000504 GO:0003723
Seca5g04982 320 Gene3D - 51 150 IPR012677 -
Seca5g04982 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 241 IPR000504 GO:0003723
Seca5g04982 320 SUPERFAMILY RNA-binding domain, RBD 63 144 IPR035979 GO:0003676
Seca5g04982 320 PANTHER GEO13361P1-RELATED 156 231 - -
Seca5g04982 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 137 IPR000504 GO:0003723
Seca5g04982 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 228 IPR000504 GO:0003723
Seca5g04982 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 137 IPR000504 GO:0003723
Seca5g04982 320 Gene3D - 151 235 IPR012677 -
Seca5g04982 320 SUPERFAMILY RNA-binding domain, RBD 152 231 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04982 Seca-Chr5 107124601 107125907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04982 151 231 C2H2 Transcription Factor Family AT2G19380 34.568 2.60e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04982 K12741 - zju:107411269 271.552