Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04981 ATGTCAACTTCTTCATCATCATCCTCTTCTTCTATTTGGGTATTGTCTAACATAAAGCTTCAGTTCTTTGCCCGCATCAGGCGGTTTCTCCAATCCAAAGCAACCCGAAAGCGCTGCGACCCCTCTGATCGATTTGACATAGCAAAAAGCAGAGCAGAGCAGAGCATCAAGGTTGAAAATATTGAAACAGTTCAAGCTATGGAGAAGCATAAGGAAGAGGAGGAAGAGCCTGCGATCCTGTTGCAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCAGCAAAGGAGATTGAAAGGTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATGACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCACAGGTGGCTAGTCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAATTGACTTTGTAGATGAATCAACAATGAGTGAGTTTGCAGAGTTGCTTTTATCATTGTCATCTCTTGCAAACACCCAATTCCCCTTTACTTCATTAGACTTTCTACCATTACTTAGACAAATTCTTGAGACAGGCTCAAGTAATTTTGATGCCAAAGGGTCATGTTTGGGAGCCTTATACAACCTATCAACTGTGCTAGAGAATGCAGGCCCTTTGGTTTCTAGTGGGGTAGTCCCTACCCTCTTGGAATTGTCCTTAGTGAAAGAAATTTCAGAGAAGGCACTTGCAACTCTTGGGAACTTGTTGGTGACTTCCATGGGAAAGAAAGAAATAGAGAACAGCTCAATGGTGCCAAAAAGCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTTTATATTTTGATGATTCTGGCTCATCAAAGCTCATCACAAAGAGAGAAAATGGCACAAGCTGGGATTGTTCCTATGCTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTAGCTCAGAAGAGAGCACAGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACAAAGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGTTCACCTGTTAATCAAAGAGATGCAAAAGAAGGAAAGAAATTGATGAAGAGTTTGGTGAAGCAAAGCCTACATAGGAATATGGAAATGATAACACAGAGGGCAAATGCAGCTGGGGAGTCTTCTAAACTGAAGTCTTTGGTCATCAGCACAAGTTCCAAGAGTTTACCTTACTAA 1311 0.4348 MSTSSSSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRCDPSDRFDIAKSRAEQSIKVENIETVQAMEKHKEEEEEPAILLQRTVKMLHFGSWEEKEVAAKEIERLAKEDVKVRKLMTELGVVPVLVSMVASQVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIDFVDESTMSEFAELLLSLSSLANTQFPFTSLDFLPLLRQILETGSSNFDAKGSCLGALYNLSTVLENAGPLVSSGVVPTLLELSLVKEISEKALATLGNLLVTSMGKKEIENSSMVPKSFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPMLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQRDAKEGKKLMKSLVKQSLHRNMEMITQRANAAGESSKLKSLVISTSSKSLPY. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04981 436 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 11 436 - -
Seca5g04981 436 SUPERFAMILY ARM repeat 80 357 IPR016024 -
Seca5g04981 436 SMART arm_5 193 235 IPR000225 GO:0005515
Seca5g04981 436 SMART arm_5 236 274 IPR000225 GO:0005515
Seca5g04981 436 SMART arm_5 152 192 IPR000225 GO:0005515
Seca5g04981 436 SMART arm_5 110 150 IPR000225 GO:0005515
Seca5g04981 436 Gene3D - 50 416 IPR011989 -
Seca5g04981 436 MobiDBLite consensus disorder prediction 363 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04981 Seca-Chr5 107119707 107123033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04981 94 374 U-box Gene Family AT1G67530 32.639 8.84e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04981 - - gmx:100813828 696.812