Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04980 ATGGAGAAGGGAGAACTAGTGAAATGCCCTGCTACGATAGGGCAGAAAAATATTTGTGAGGCCAAAGCTTTAGCAGCTTTGAAAAGCCATAGCGAAGCAGAGAAGAGGAGAAGGAATAGAATTAATGGTCATCTTGCAAAACTCCGTGGTCTTGTGCCCTGCACTGCAAAGGTAATGGATAAAGCCACATTACTAGCTGAAGTTATTAGCCAAGTGAAGGAATTGAAAAAGAATGCAGCTGAATCAAGCAAAGGTTTTCTAATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGATGGAGGAGCAGATGGATCAGTGCCTTATAGGGCAACTGTCTGCTGTGATTACCGACCTGATCTACTATCTGAGCTAAGACAAACTCTTGATGCCCTTCAACTACAATTGGTGAGAACAGAACTATCAACTTTGGGAGACAGGGTAAAGAATGTATTTGTCTATAGCTGCTGCAAAGGGGACATTAATGATATTGAGGCATGTCAACTTATTGCAAGTACTGTTCACCAGGCACTGAGTTCTGTACTGGATAAGCCTTCTAGCTCACTGGATCATTACTCTCTAAGAGAGTCATATCCTTGCAAGCAGCGAACATCTACTTTCTCATGCAACCATGAATCTTGTTCATGTTGA 657 0.4216 MEKGELVKCPATIGQKNICEAKALAALKSHSEAEKRRRNRINGHLAKLRGLVPCTAKVMDKATLLAEVISQVKELKKNAAESSKGFLIPMDADEVKVEPCDDGGADGSVPYRATVCCDYRPDLLSELRQTLDALQLQLVRTELSTLGDRVKNVFVYSCCKGDINDIEACQLIASTVHQALSSVLDKPSSSLDHYSLRESYPCKQRTSTFSCNHESCSC. 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04980 218 CDD ACT_UUR-ACR-like 114 180 - -
Seca5g04980 218 Gene3D - 20 85 IPR036638 GO:0046983
Seca5g04980 218 SMART finulus 31 81 IPR011598 GO:0046983
Seca5g04980 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 81 IPR036638 GO:0046983
Seca5g04980 218 CDD bHLH_AtAIG1_like 20 99 - -
Seca5g04980 218 PANTHER TRANSCRIPTION FACTOR BHLH30 15 207 IPR045847 GO:0003700|GO:0006355
Seca5g04980 218 Pfam Helix-loop-helix DNA-binding domain 29 75 IPR011598 GO:0046983
Seca5g04980 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 75 IPR011598 GO:0046983
Seca5g04980 218 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04980 Seca-Chr5 107101956 107105940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04980 3 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 43.784 2.60e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g04980 HLH 7.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04980 - - gmx:100804756 300.056