LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g04976	ATGAATGACCTGTGGTTGTACAGGAGAGGAGAGGCTCCTTCAATGGTTGTTATGATAATCAATAGGTGCTCAATCTTGGGGCCACCTGAACCTGATTGGTGGGCACTAGCTGACCTGGCACAATCCCATCCATTAACCTTTCCCAACTCACATCTCAACTTCAAGAAGTGTACGTTAGTTTTGTTTTGTGTTTTGACAAATTGGCATGGCGCAGCCCCTAATTTTTTCTGGTGGCTACCTTTACCCTCTCATACGGCCACAGCCGCCACAGCTTGTGCCTCTGGCTCTATTCATTTCCCCTTTCCTATTACTCTCGTTTACTGCAGAATCTCTCACTCAGGTGCAAACAAAAGACAGAGACACGAGAGCCTTAGAGCACAAGCTATGAGTACTGCTAGTCAGGGAAAGTCTCTTGCCATAACCACTGGGAATCTGGAGAATGATCCTGATCATCTCCTTGTTCTTGTCCATGGTCTCTTGGCTCGCCCAAGTGAGTGGACTTATACAGAGACAGAGTTAAAAAAGAACCTTGGAAAAAGCTTTTTAATTTATGCAAGTTCATCAAATTCTTACGCTAAGACATTAAACGGGATTGATGAAGGTGGAAAGCGATTAGCGGATGAAGTCATGCAAGTTGTAAAGAAGACAAAGAGCCTGAAGAAAATATCCTTTGTGGCCCATTCTCTAGGAGGCCTCTTTGCCAGATATGCAATTTCTATCCTTTATTCACCTGACACCTATAATAACGGTCGAGCTGGTGATCCAGCAAACTTCATGACGGAAATTTCACAGAAAACAGACTTTTCAAGAGGGACGATTGCTGGGTTGGAGCCAATAAATTTTATTACTTTAGCAACTCCACATCTTGGTGTAAGGGGGAAAAAGCAGCTTCCATTACTATTGGGTGTTCCAATCCTAGAAAAGCTTGTTGCGCCTATAGCTCCATATTTTATTGGTCGAACTGGTAGTCAGCTGTTCCTTACTGATGGTAAACCCAACAACCCATCTCTTCTTTTGAGAATGGCTTCTGATTGTGAAGATGCAAAATTCATATCTGCGCTTGGAGCATTTAGAAGTCGTGTTGCTTATGCTAATGTATCATATGATCATATGGTTGGATGGCGCACGTCCTCTATAAGGAGGGAAAACGAACTTCGTAAGCCTCCAAGCCAATCTTTGGATGGATACAAGCATGTTGTTGATGTGGAATACTGCCTCCCAATTCCTTCTGATGGGCCACAATTTCCTCCGGAGGCAGTGAAAGCAAAGGAGATTGCACAAAATACTCAGAGTACTGTGGAATTTCATGAAATTGTGGAAGAGGAGATGATACGGGGATTACAACAATTGGGATGGACAAAAGTTGATGTCAGTTTTCACTCAGCATTCTGGCCTTTCTTTGCTCACAGCAACATTCAGTCTCCACCCTCGCACCAAGCATTACAAACTGTTGCGCCAATTCTAGAGCGAGAAAGCACCAAAAGGTTGAAGAAAGAGAAAGCTCGTAGATCGGCCATGGCATCCTCAAAGGAACGTGAAAATTTCATCTATGGCGCCAAGCTCGCTGAACAAGCCGAGCGATACGAAGAAATGGTGGATGCGATGAAGAATGTGGCGAAGCTGAATGTAGAATTGACGGTTGAAGAGCGAAACCTTCTGTCAGTTGCGTACAAGAATGTGGTGGGCGCACGCAGGGCCTCGTGGAGGATCCTGTCGTCGATTGAACAGAAGGAGGAATCGAAAGGGAACGATCTGAATGCGAATCGGATAAAGGAATATAGGAAAAAGGTGGAATCTGAGTTGGCCAATATATGCACCGATATCATGACTATGATCGATAACCATCTCATTCCACACTCGTCGGGTGAATCCAATGTCTTCTACTACAAAATGAAAGGTGACTATTACCGGTATCTGGCTGAGTTTAAGGCTGGGGATGAGAGAAAAGAGGCTGCTGATCAGTCCTTGAAAGCATATCAGGAAGCTTCCACTGCAGCAGAAGCTGAGTTACCTCCCACACATCCCGTCAGACTGGGTTTGGCTTTGAACTTCTCTGTCTTCTATTATGAAATTTTGAACTCTCCTGAAAGGGCTTGTCACCTTGCCAAGCAGGCATTTGATGTAGCAATCTCTGAGTTGGATACTCTCAATGAGGAATCTTACAAAGACAGCACACTAATTATGCAACTTCTGAGGGACAACCTCACCTTGTGGACTTCTGACATCCCTGAAGATGGAGGTGGAAATTAA	2250	0.444	MNDLWLYRRGEAPSMVVMIINRCSILGPPEPDWWALADLAQSHPLTFPNSHLNFKKCTLVLFCVLTNWHGAAPNFFWWLPLPSHTATAATACASGSIHFPFPITLVYCRISHSGANKRQRHESLRAQAMSTASQGKSLAITTGNLENDPDHLLVLVHGLLARPSEWTYTETELKKNLGKSFLIYASSSNSYAKTLNGIDEGGKRLADEVMQVVKKTKSLKKISFVAHSLGGLFARYAISILYSPDTYNNGRAGDPANFMTEISQKTDFSRGTIAGLEPINFITLATPHLGVRGKKQLPLLLGVPILEKLVAPIAPYFIGRTGSQLFLTDGKPNNPSLLLRMASDCEDAKFISALGAFRSRVAYANVSYDHMVGWRTSSIRRENELRKPPSQSLDGYKHVVDVEYCLPIPSDGPQFPPEAVKAKEIAQNTQSTVEFHEIVEEEMIRGLQQLGWTKVDVSFHSAFWPFFAHSNIQSPPSHQALQTVAPILERESTKRLKKEKARRSAMASSKERENFIYGAKLAEQAERYEEMVDAMKNVAKLNVELTVEERNLLSVAYKNVVGARRASWRILSSIEQKEESKGNDLNANRIKEYRKKVESELANICTDIMTMIDNHLIPHSSGESNVFYYKMKGDYYRYLAEFKAGDERKEAADQSLKAYQEASTAAEAELPPTHPVRLGLALNFSVFYYEILNSPERACHLAKQAFDVAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGGGN.	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g04976	749	ProSitePatterns	14-3-3 proteins signature 1.	550	560	IPR023409	-
	Seca5g04976	749	SUPERFAMILY	14-3-3 protein	511	741	IPR036815	-
	Seca5g04976	749	Pfam	14-3-3 protein	519	739	IPR023410	-
	Seca5g04976	749	Gene3D	alpha/beta hydrolase	153	324	IPR029058	-
	Seca5g04976	749	Coils	Coil	649	669	-	-
	Seca5g04976	749	SMART	1433_4	512	749	IPR023410	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	658	684	IPR000308	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	623	645	IPR000308	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	544	573	IPR000308	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	685	711	IPR000308	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	712	741	IPR000308	-
	Seca5g04976	749	PRINTS	14-3-3 protein zeta signature	593	617	IPR000308	-
	Seca5g04976	749	ProSitePatterns	14-3-3 proteins signature 2.	721	740	IPR023409	-
	Seca5g04976	749	Gene3D	-	490	746	IPR036815	-
	Seca5g04976	749	FunFam	Hydrolase-like protein family	153	324	-	-
	Seca5g04976	749	SUPERFAMILY	alpha/beta-Hydrolases	147	379	IPR029058	-
	Seca5g04976	749	FunFam	14-3-3 protein epsilon	506	749	-	-
	Seca5g04976	749	Pfam	Putative serine esterase (DUF676)	147	376	IPR007751	-
	Seca5g04976	749	PANTHER	14-3-3 PROTEIN	512	742	IPR000308	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g04976	Seca-Chr5	107045192	107054333	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g04976	506	749	14-3-3 family	AT2G42590	80.000	4.85e-140	411

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g04976	-		-	adu:107468279	537.339