Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04966 ATGGATGACGGTTACTTCAGGAGGAATTACTCCGCGATGGCGGCCGCCGCGGCTGCTGCAGAGGCTGATGAGGAGGAGGACGACGAGGAGGAGGAAGAGGAAGCGGAGGAGGAGGAAGATGAAGATGAAGGGAGGGGAAGCGAAGTGGAGGAAGGGGAGAGGGAGAGGGAAGGGTTGAGGAGGTTGGCGAAGGCGATAGAGAGGTTTGGTGAAGTGTATGAAAGAGTGGAAGGACAGAAACTGAGGCAGATGGTGGATTTGGAGAAACAGAGAATGCAGTTTGCCAAAGATCTTGAAGTGCAGAGGATGCAGATGTTTATGGACACACAAGTTCAGCTGGAGAGAATTAAGCGTGGGAAACGATCTGGGTCTAACGATATGTATAGCTAG 390 0.5231 MDDGYFRRNYSAMAAAAAAAEADEEEDDEEEEEEAEEEEDEDEGRGSEVEEGEREREGLRRLAKAIERFGEVYERVEGQKLRQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04966 129 MobiDBLite consensus disorder prediction 20 48 - -
Seca5g04966 129 Coils Coil 12 45 - -
Seca5g04966 129 MobiDBLite consensus disorder prediction 1 57 - -
Seca5g04966 129 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 6 120 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04966 Seca-Chr5 106937917 106942994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04966 5 128 Trihelix Transcription Factor Family AT3G14180 35.938 4.97e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04966 - - gmx:100815241 150.599