Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04960 ATGTCAGAAGGATATGAGGAAACTTCATCGGGATCTTCCCAGAAATGTTCTTCCTTTGACTTGAATGAAGAAGCTAGCTGCAGTGAAGATAATAAGGATGAGGCCTGTGAGCTCAGACATGAAGAGAAAGCAAATATTGATGATGAGGGCAGTTCAGCAGCAAATAGAAGCAGTAGCAGTACATCAAATTCAAGAGGAACGGTTAGACAATATGTTAGATCCAAGATGCCTCGCCTTCGCTGGACTCCTGACCTTCATCTCTCCTTTGTGCATGCTGTTGAAAGGCTCGGAGGTCAAGAGAGAGCAACACCCAAGATGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTACCGAAGCAAGAAACTTGACGAGCCCGGCCAAGGTCAGGGATTTAGGGTTAGGAATTTGCATGCAGTACTAAGCCAAGAAGTAGGTCGTAGATCTCAGATATTCCATCATCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTAATTTTAACCATCACAGTACTCATCATTTCCAACCCTCCTTCTCCCTTTCACGTTCACATACGGACTCCTCAAGTAGGCACCAGCATTGGTATTACAATGATCATCAACATTTAAGAATGCCAATAGCTTCAAACCAATTAGTTGCACCAAAGGATACAAATACAATTGCAGCCGTGAGACCAATTACCCAATTTGTTGAAGAGAAAGGTTGGCCTAAAACTAATTGGTCATCACAAGCTGTTGAGCCAACAGAACGCATCACAGAATATCTATCGAGCTCCAATGAACCTCGCAACTATTCCGCTAGTTTTAACCTCCTACAATTTGATCCCCCATTTCGGATTAAGTTGAATCAAGAGAAAGACGAGCAACAGTTGCCTGAACTGCAACTGGGTTTGAGTCACACAGATATTGGAACCGATGACCGTTGCAGAGAAACCCAAGAAATTAGCACCAAGTTATCACTTTCTTAG 1008 0.4276 MSEGYEETSSGSSQKCSSFDLNEEASCSEDNKDEACELRHEEKANIDDEGSSAANRSSSSTSNSRGTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKMVLQLMNVRGLSIAHVKSHLQMYRSKKLDEPGQGQGFRVRNLHAVLSQEVGRRSQIFHHQHFKMGNGGIILASNFNHHSTHHFQPSFSLSRSHTDSSSRHQHWYYNDHQHLRMPIASNQLVAPKDTNTIAAVRPITQFVEEKGWPKTNWSSQAVEPTERITEYLSSSNEPRNYSASFNLLQFDPPFRIKLNQEKDEQQLPELQLGLSHTDIGTDDRCRETQEISTKLSLS. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04960 335 MobiDBLite consensus disorder prediction 1 69 - -
Seca5g04960 335 SUPERFAMILY Homeodomain-like 75 131 IPR009057 -
Seca5g04960 335 FunFam Myb family transcription factor 75 133 - -
Seca5g04960 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 133 IPR017930 -
Seca5g04960 335 MobiDBLite consensus disorder prediction 25 49 - -
Seca5g04960 335 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 132 IPR006447 GO:0003677
Seca5g04960 335 Gene3D - 76 133 - -
Seca5g04960 335 MobiDBLite consensus disorder prediction 50 69 - -
Seca5g04960 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 189 IPR046955 GO:0003700
Seca5g04960 335 Pfam Myb-like DNA-binding domain 79 129 IPR001005 -
Seca5g04960 335 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04960 Seca-Chr5 106868243 106871830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04960 68 142 G2-like Transcription Factor Family AT2G42660 78.667 1.32e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca5g04960 Myb_DNA-binding 5.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04960 - - gmx:100787474 327.791