Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04958 ATGGGAATGAGATGCAACACATTTGGATTTTGGTTTAGAATTTATATTTGCTTGATATCTGTGTGGGGAATCCAAGAGTGTTGGTCGCTTAATGATGAAGGATTGGCTCTGTTGGAGTTCCGGACAAAAATAACTTCTGATCCTTATGTTGCCTTGGCAAATTGGAATCCAAATGATTGTGACCCTTGCAAGTGGTCAGGTGTTCATTGTGTCGATGGTAAAGTGCAAATGCTGGACCTAAACGGGCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTGCTCACTTAAAATCTCTTGTGTTGAGCAAGAACAACTTCTCTGGCACCATTCCCAAAGAACTTGGAGATCTAGGCAAGCTGGAGTTGTTGGATTTAAGGGAGAATAACTTGTCAGGAAGCATTCCAGCAGAAATTACCAGGATGTTATCGCTAAAACACTTGTTGCTTTGTGACAATAAAATTGAAGGTAGTGATTCTCAAGATCAAGGAAAATTCAGATTACTTGTTGCCGATTGTTCTCTAACAACCTTTTTTGCTTGCATCAATAGAAAGTTTGGACATTGGTTCAAGAATGACCATGAAGGGAAATTCTGCCATGTTCTACCTAGTAAGTGGAGAACCTTCACTAAATTATGGCCTGTTGAGCGATTGAAATATTTGCTTCTGAATCTGATTGACACTGAAAACATGTCAGGTTCTAATGAGCTAGAGATTATCCAAAATGCACCAAATCTTGTCAATTCTGCACGTCGTAAGTTACTTGATCAGACAAGTAACATGGCAGCTGCACCTTATAGTGGTGGACCTACTATAGAGTTCAGTTCTGTTCCAATTACAGTGAGTAGTGGATCTTTCCCAGCTGTGCCAGATGCCAATAAAAAACAGAATCAGTTACCTTCACCACTGCCTTCACCTCCTGATCCTCCACATGATGCTTCTGATGGAAATCAAACAAGTCAACAACATTCACCTAATGGAAGTGGTGCTTCTGGAAAGTTGTGGAAGTACATAATTATTAGTATAGCTGTGGTTGTGTTGGTCATTGTTATCATAATTCTTCTTTGCATTTGGCGAAAACGAGCAGCAAAAATAATAACCCCCTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTGCCCAACTTGAATAGAGCAGAACTAGAGACAGCTTGTGAGGATTTCAGCAATATTGTTATTAATTTTGATGCATGCACCATATACAAAGGAACACTGTCCAGTGGGGTTGAGATTGCTGTTGTTTCTACTCTGATTACTTCTTCCCAAGATTGGTCTAAGAGCATGGAGATGAACTACCGGAAAAAGATTGATACTTTGTCCCGCATAAACCATAAGAACTTCATTAATCTTATTGGGTATTGTGAAGAAGAAGAACCATTCACAAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAGTCTATTTGAGCATTTACATGTTAAGGAAATTGAACGTCTTGATTGGAGTGAAAGGGTGAGGATCATAATGGGCACTGCTTATTGTCTTCAGTATATGCACCATGATCTGAATCCACCCATAGCTCATAGCAAGCTTACTTCAAGTATGGTATTATTAACAGATGATTTTGCCGCCAAGATTGCAGAGATCACTTTTGGAAATGTTGTATCACCAGCTAAGACAAGTGGAGGTGATTCAAAGAAATCTGAGTCACCACCCCGTGATGATCTTGCAACCAATGTCTATGACTTTGGAATATTGCTGCTTGAAATCATTTCTGGGAAATTGCCTTGTTCTGAAGAAGAAGGCAATCTTGTGAATTGGGCTGCTGAGTACTTAAATGACAAGAAAAGCATCAGCTATATGATTGATCCATCCCTGAAGTCTTTCAAGGATAATGAACTTGATGTCATATGTGAGGTGATCAAAGATTGTATCCAACCGGAAACAAAGTTAAGACCCACAATGAGGGACATAACTTCCAAATTGAGGGAAGTGATTAGTGTGTCACCTGAGCAAGCGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAGGCCACTTGA 2085 0.4038 MGMRCNTFGFWFRIYICLISVWGIQECWSLNDEGLALLEFRTKITSDPYVALANWNPNDCDPCKWSGVHCVDGKVQMLDLNGLSLEGTLAPELGKLAHLKSLVLSKNNFSGTIPKELGDLGKLELLDLRENNLSGSIPAEITRMLSLKHLLLCDNKIEGSDSQDQGKFRLLVADCSLTTFFACINRKFGHWFKNDHEGKFCHVLPSKWRTFTKLWPVERLKYLLLNLIDTENMSGSNELEIIQNAPNLVNSARRKLLDQTSNMAAAPYSGGPTIEFSSVPITVSSGSFPAVPDANKKQNQLPSPLPSPPDPPHDASDGNQTSQQHSPNGSGASGKLWKYIIISIAVVVLVIVIIILLCIWRKRAAKIITPWKTGISGQLQKAFITGVPNLNRAELETACEDFSNIVINFDACTIYKGTLSSGVEIAVVSTLITSSQDWSKSMEMNYRKKIDTLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGSLFEHLHVKEIERLDWSERVRIIMGTAYCLQYMHHDLNPPIAHSKLTSSMVLLTDDFAAKIAEITFGNVVSPAKTSGGDSKKSESPPRDDLATNVYDFGILLLEIISGKLPCSEEEGNLVNWAAEYLNDKKSISYMIDPSLKSFKDNELDVICEVIKDCIQPETKLRPTMRDITSKLREVISVSPEQAVPRLSPLWWAELEILSVEAT. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04958 694 MobiDBLite consensus disorder prediction 292 329 - -
Seca5g04958 694 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Seca5g04958 694 SUPERFAMILY L domain-like 29 177 - -
Seca5g04958 694 Gene3D Phosphorylase Kinase; domain 1 373 482 - -
Seca5g04958 694 Gene3D Transferase(Phosphotransferase) domain 1 483 675 - -
Seca5g04958 694 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 30 177 - -
Seca5g04958 694 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca5g04958 694 MobiDBLite consensus disorder prediction 314 329 - -
Seca5g04958 694 ProSiteProfiles Protein kinase domain profile. 322 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04958 694 PANTHER PROTEIN MALE DISCOVERER 2 14 692 - -
Seca5g04958 694 SUPERFAMILY Protein kinase-like (PK-like) 413 663 IPR011009 -
Seca5g04958 694 Gene3D Ribonuclease Inhibitor 29 214 IPR032675 -
Seca5g04958 694 Pfam Protein tyrosine and serine/threonine kinase 414 663 IPR001245 GO:0004672|GO:0006468
Seca5g04958 694 FunFam Inactive receptor-like serine/threonine-protein kinase 374 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04958 Seca-Chr5 106843895 106849614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04958 30 668 Receptor kinase-like Gene Family AT3G57830 24.282 7.26e-47 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca5g04958 PK_Tyr_Ser-Thr 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04958 - - adu:107468254 895.19