Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04957 ATGCGCTCAGGTGTCCCTCTCCCTCTCTGCAAAGCGTCAAACACCACTATTAGGCGATTGCTGCGCGTAAGCCATGCATCCACCCTTTTCCCTTCCGTGTCTTCCCCTCCTCTTTCCATCTGGTCACTTTCCCCTTCCTCTCTTACTATTAATTCAACCTCAAACACACATTCAGAATTCAGAGAGAGAGAATTAATGAAGAACACTGTGGTGGAGAAGTTCTCTGATTTCTACGAGAAGTGGATTTGGAAGGTGGAGGAGATCCTCCATCAGCTTCTGGAGGTGTCAAAGCAGAGAAAGGAGGTGGTCAAGACTGAGCAAGAGCTGCAAGCACTGGTCTCCAAAGCCACATCCCACATCAAGGAATACTACACTGTCAAATGGGGTGCTGCTCATGAAGACGTTCTCGTCTTCTTCTCACCAACCTGGGTCACTCCTCTGGAGAATGCTTACATGTGGATGACTGGTTGGAAGCCTTCCTTGGTGTTCCGCCTCCTCAAGAAGGGCCCAACCATGACAGAGGAGCAGCAGAAGAAGGTGGAGGAGCTGAGAAAGAGGATCAGGATGGAGGAGGATAAGGTGGAGAGGGACATGGAGAGGCAGCAAGTGGCCATGGCTGACCCAAAGATAGTGGACCTGGCAAAGCAGTCTGGCAGATCAATGAAGCTGGTGGGTGAGGGTGATGCTGCTGCAACAGGGGTTGATGGGTTGGTGGATGTGGCCTTGAAGGGTGTCTTTGCAGGCTTGGAGAGGGTCATGAAGGCTTCTGATTGTGTCAGACTTAAGGCACTCAAGGGGGTTTTGGATGTGCTTGGTCCAATGCAGTCTGTGGAATTCTTGGTTGCATTTATAGCTATGCAGTTAAGGCTGAGGCAATGGGGGAAGAAGAGAGACATGGCTGCTGCATCCATGCTCAATCAGGACAAGTGA 930 0.5075 MRSGVPLPLCKASNTTIRRLLRVSHASTLFPSVSSPPLSIWSLSPSSLTINSTSNTHSEFRERELMKNTVVEKFSDFYEKWIWKVEEILHQLLEVSKQRKEVVKTEQELQALVSKATSHIKEYYTVKWGAAHEDVLVFFSPTWVTPLENAYMWMTGWKPSLVFRLLKKGPTMTEEQQKKVEELRKRIRMEEDKVERDMERQQVAMADPKIVDLAKQSGRSMKLVGEGDAAATGVDGLVDVALKGVFAGLERVMKASDCVRLKALKGVLDVLGPMQSVEFLVAFIAMQLRLRQWGKKRDMAAASMLNQDK. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04957 309 Coils Coil 173 200 - -
Seca5g04957 309 Coils Coil 95 115 - -
Seca5g04957 309 Pfam Seed dormancy control 92 167 IPR025422 GO:0006351|GO:0043565
Seca5g04957 309 ProSiteProfiles DOG1 domain profile. 71 300 IPR025422 GO:0006351|GO:0043565
Seca5g04957 309 PANTHER DOG1 DOMAIN-CONTAINING PROTEIN 72 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04957 Seca-Chr5 106841357 106842286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04957 108 291 bZIP Transcription Factor Family AT3G12250 28.649 3.65e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04957 - - gmx:100808459 344.354