Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04954 ATGCAAAGGTATGAGCTAGGACGCTTTCTTGGCCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTGGCCATCAAAGTCCTAAACAAAGAGATGATCATGAGGGTTGGCTTGAAGGAGCAAATCAAGCGCGAAATCTCAGTGATGCGTCTTATGAAGCACCCTAACATTGTGCAGCTCTATGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAATACGTGAAAGGTGGTGAGCTTTTCAACAAAGTATCCCGAGGGAGGCTGGGGGAAGATGTGGCCAGAAAATATTTCCAGCAGCTGATTGAAGCTGTTGATCACTGCCACAGCAGAGGGGTTTATCACCGTGACCTCAAACCTGAGAATCTTCTCCTTGATGAAAATGGGGACCTTAAAGTTTCAGACTTTGGCTTGAGTGCATTGTTGGAACACAGGAAGAATGATGGCCTTCTTCACACAACTTGTGGCACTCCAGCTTATGTAGCACCTGAGGTGATCAGGAAGAAAGGGTATGATGGAGCCAAGGCTGATATTTGGTCCTGTGGGGTCATTCTCTATGTTCTCTTGGCAGGTTTTCTTCCTTTCAATGATAAAAATCTAATGGAAATGTATAGGAAGATTGCCAGAGCAGATTTCAAGTTCCCACAATGGTTCCGTTCAGATGTGAAAAGGCTTCTCTATAGAATTCTTGATCCCAATCCAAGGACAAGAGTTAGCATTGCCAAGATCATGCAGAGCAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGCACCCCTGTTGCCACCTTTATCCCCTAGAGGTGAGGATGTCTCGGATGTTCAGGATGCATTTGATTCATCAAGTTCAGATGGAGGTTCAGCATCAGATAAAGAAGAAGGCCCCATAAACCCATATTGTTTCAATGCATTTGATCTCATATCACTCTCTTCAGGATTTGATCTTTCTGGTCTGTTTGAAAATGACAAGAGTGAAAGACAGCAAGCAATATTTACTACTAAAAAATCACCTTCCACAGTTGTGTCAAAACTTGAAGAGATAGCACAGATAGACGGTAGATTTAAGGTCCTGAAGAAAAACTGGATTGTTAGATTGGAGGGATGCAAGGCAGGGCCTAAAGGACAACTCAGTATAGATGCAGAAATTTTTGAAGTTACATCTTCCTTTCATATTGTTGAGGTGAAGAAAATTGCTGGAGACACATTGGAATATAGCAAGTTCTGGGAACAATGCCTCAAGCCTTCTCTAAATGAAATAGTTTGGGCTTGGCAAGGATATGAGCAACAGTAA 1317 0.426 MQRYELGRFLGQGNFAKVYHARNLKTGQSVAIKVLNKEMIMRVGLKEQIKREISVMRLMKHPNIVQLYEVMASKTKIYFAMEYVKGGELFNKVSRGRLGEDVARKYFQQLIEAVDHCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSALLEHRKNDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGFLPFNDKNLMEMYRKIARADFKFPQWFRSDVKRLLYRILDPNPRTRVSIAKIMQSSWFRKGYKQIEAPLLPPLSPRGEDVSDVQDAFDSSSSDGGSASDKEEGPINPYCFNAFDLISLSSGFDLSGLFENDKSERQQAIFTTKKSPSTVVSKLEEIAQIDGRFKVLKKNWIVRLEGCKAGPKGQLSIDAEIFEVTSSFHIVEVKKIAGDTLEYSKFWEQCLKPSLNEIVWAWQGYEQQ. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04954 438 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Seca5g04954 438 Gene3D Kinase associated domain 1, KA1 305 431 - -
Seca5g04954 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 419 - -
Seca5g04954 438 Pfam NAF domain 308 365 IPR004041 GO:0007165
Seca5g04954 438 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04954 438 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04954 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Seca5g04954 438 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04954 438 MobiDBLite consensus disorder prediction 271 303 - -
Seca5g04954 438 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Seca5g04954 438 CDD CIPK_C 311 426 - -
Seca5g04954 438 CDD STKc_SnRK3 3 257 - -
Seca5g04954 438 FunFam Non-specific serine/threonine protein kinase 305 430 - -
Seca5g04954 438 FunFam Non-specific serine/threonine protein kinase 1 303 - -
Seca5g04954 438 SUPERFAMILY Protein kinase-like (PK-like) 2 281 IPR011009 -
Seca5g04954 438 FunFam Non-specific serine/threonine protein kinase 1 83 - -
Seca5g04954 438 Gene3D Transferase(Phosphotransferase) domain 1 1 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04954 Seca-Chr5 106822134 106823450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04954 1 434 CBL-interacting serine-threonine protein kinases AT5G45820 65.057 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g04954 Pkinase 2.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04954 K07198 - gmx:100807927 691.034