Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04953 ATGGCGGACGTACTTTCCAAAAAGACCACCCACACCAACCCTAGCAAGAAGGAGACATCGAATCTCTTACTGGGTCGCTTTGAAATTGGGAAGCTCCTTGGCCATGGAACCTTTGCCAAGGTCTACTATGCGAGGAACGTCAAAACAGGAGAAGGGGTAGCCATCAAGGTGATTGACAAGGAGAAGATCCTAAAGGGTGGTTTGGTGGCACACATAAAACGCGAGATCTCCATTCTCCGCCGTGTCCGCCACCCAAACATCGTTCAACTCTTTGAGGTGATGGCTACCAAAACCAAGATCTATTTTGTAATGGAATATGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGTTGAAGGAGGAAGTTGCAAGGAAGTATTTTCAGCAATTGATCTCTGCCGTTGGATTCTGCCACGCCAGAGGGGTCTACCATAGGGATCTCAAGCCTGAAAATTTGTTGCTTGATGAGAATGGTAACCTCAAAGTCTCTGATTTTGGGCTCAGTGCGGTGTCTGATCAAATCAGACAAGATGGGTTGTTCCACACCTTTTGTGGCACTCCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGGTATGATGGTGCAAAGGTTGATCTTTGGTCTTGTGGGGTTGTCTTGTTTGTGTTGATGGCAGGGTATTTGCCATTCCATGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGTGAGTTTAGGTGCCCAAGGTGGTTCTCACCTGACTTATCTAAGCTCCTCACTCGTCTTCTTGATACCAAACCTGAAACAAGGATTGCCATTCCTGATATTATGGAGAACAAGTGGTTCAAAAAAGGGTTCAAACAAATTAAGTTTTATGTTGAGGATGATAGGCTTTGTAATGTTGATGATAGCGCCCTTATGGACAATGATGATGATACAGATTACTCAATATCTGAGTCTGACTCTGAGGTAGAGACTAGAAGGAGGAATGCTCCATTGCCAAGACCAGCAAGTTTGAATGCTTTTGACATTATATCATTCTCCCCGGGTTTTGATCTTTCTGGATTGTTTGAGGAAAAAGGGGATGAGGCCAGGTTTGTGACTGCTGCACCAGTTTCCAAGATCATATCAAAATTGGAGGAAATTGCTCAGTTGGTTAGGTTTACTGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGCACCAGAGAAGGTGTAAAGGGGCCATTGACTATTGCTGCTGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTGGAAGTGAAGAAAAAAGGAGGGGACAGAGCTGAGTATGAGAGGTTTTGTAACAATGAATTGAAACCTGGGCTGCAGAATTTGGTGGCTGATGAATCTGCAACTTCTTCAACTTTGTCCACACCTACTGAGCCTTCCTTGCTGCGTGTGCTTTCTGAACCCACACACAACTTATCTTCGGATATGGAATCTCCATGCTATATGGCTTCAGATACCTGA 1491 0.4467 MADVLSKKTTHTNPSKKETSNLLLGRFEIGKLLGHGTFAKVYYARNVKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSKLLTRLLDTKPETRIAIPDIMENKWFKKGFKQIKFYVEDDRLCNVDDSALMDNDDDTDYSISESDSEVETRRRNAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSKIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLVADESATSSTLSTPTEPSLLRVLSEPTHNLSSDMESPCYMASDT. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04953 496 Gene3D Transferase(Phosphotransferase) domain 1 17 331 - -
Seca5g04953 496 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Seca5g04953 496 ProSiteProfiles Protein kinase domain profile. 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04953 496 FunFam Non-specific serine/threonine protein kinase 17 329 - -
Seca5g04953 496 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04953 496 Pfam NAF domain 335 391 IPR004041 GO:0007165
Seca5g04953 496 CDD STKc_SnRK3 26 280 - -
Seca5g04953 496 SMART serkin_6 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04953 496 CDD CIPK_C 339 450 - -
Seca5g04953 496 ProSiteProfiles NAF domain profile. 333 357 IPR018451 GO:0007165
Seca5g04953 496 MobiDBLite consensus disorder prediction 309 329 - -
Seca5g04953 496 SUPERFAMILY Protein kinase-like (PK-like) 23 282 IPR011009 -
Seca5g04953 496 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Seca5g04953 496 Gene3D Kinase associated domain 1, KA1 333 454 - -
Seca5g04953 496 FunFam Non-specific serine/threonine protein kinase 18 106 - -
Seca5g04953 496 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 447 - -
Seca5g04953 496 FunFam Non-specific serine/threonine protein kinase 335 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04953 Seca-Chr5 106810116 106811630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04953 5 471 CBL-interacting serine-threonine protein kinases AT4G18700 78.008 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g04953 Pkinase 8.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04953 - - gmx:100790133 889.026