Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04952 ATGAAGCCCTTTTGCAGATTGTTGATTCTCTTAGCGCTTGTTGCTCTCGTGGAATCTTCATGCAGCAACAGTACTACTGGTGACCAGGACCTGGTGTCAAAGGCCTTTCAATCTGTCTCTGGATTCAACTCTTCCTGGTTCCAACCAAGAGGTTCCAACTGTTCAAAGGCTGAGATTAGGTCGATAAAGCTTCCTTTCAGAAACTTGAGTGGGAGTATCTCATGGAGGTATCTGAGGAACATGTCCAAGTTGGAGATTCTCGATCTGTCTGGGAATTATCTGCAAGGCCAGGTGCCAAACTGGTTCTGGGCAAGCTCAACCTTATTGGAAGTGAATCTGTCCAAGAACAGGTTGGGAGGGAGCATTGCTTTGAAACCCACTTCACAAAATGGTTCCTTTTCATCGCTTCAAACGCTCAATCTCTCCCACAACAGGTTCACCAATCTGATTCAGCTCTCTGGTTTTTCAAACCTGAAAAGTCTGGACCTTTCCCACAACAAGCTTGGAACTTTGCCTTCTGGGTTCCAAAATCTCACCAACCTAACCTACCTCGATCTCTCCAGCTGCAACATCAAAGGAAACGTAAAACCCATTTCTTCTATTCGCTCACTCACCCATTTGGATTTGTCAAACAACAGTTTGAATGGTGGTTTCCCTTCTGATTTCCCTCCTCTGAAGGGCATCAAGTTCTTGAACATCTCACACAACAACTTCAAATCCTCTGTTACCTTAGACAGGTTCAAAAAATTTGGAAAATCAGCATTCATTCACGCCGGTAACAACTTCAACTACTACAACGCATCCAAGACGCCAAACCTTCATTATCAACCCCACCACACGGAAAAACCAAAGTCCATTCATTTACACACCGAGCAGAAGCAGAAGAAGAAACATAAGTCAAAAGGCAAAACCAAAACCATGATTGCGGCAGTGTCCTCTGCGTCAGGGCTCGTCCTTGTCGTGTTATGCGTATGGGCATTGTTGTGTTACAGAAAGAAGAGGCAATTGGCGAAAAGGAACAAATGGGCAATCTCCAAACCGATGATTCCATTGACCATTAAGATGGAGAAATCTGGGCCGTTCGCGTTCGAGACAGAGTCAGGGACATCATGGGTGGCTGACCTTAAGGAACCGTCTTCAGCACCAGTGGTGATGTTCGAGAAGCCGCTGATGAACCTCACCTTCGTCGACCTCATGGCTGCCACGTCACACTTCGGGAAAGACTCTCAACTCGCAGAGGGTAGGTGTGGACCCGTCTATCGAGCTGTACTGCCTGGAGACATCCACGTGGCAATCAAGGTCCTTGAAAACGCTAGAGACGTTGATCATGATGACGCTGTCTCTACCTTCGTTGACCTCTCCCACTTCAAGCACCCCAATCTCTTGCCTCTTTCCGGTTACTGCATTGCAGGTGGAAGGAGAAGCTGGTGTTGTACGAGTTTATGTCAAACGGGGATTTAG 1461 0.4689 MKPFCRLLILLALVALVESSCSNSTTGDQDLVSKAFQSVSGFNSSWFQPRGSNCSKAEIRSIKLPFRNLSGSISWRYLRNMSKLEILDLSGNYLQGQVPNWFWASSTLLEVNLSKNRLGGSIALKPTSQNGSFSSLQTLNLSHNRFTNLIQLSGFSNLKSLDLSHNKLGTLPSGFQNLTNLTYLDLSSCNIKGNVKPISSIRSLTHLDLSNNSLNGGFPSDFPPLKGIKFLNISHNNFKSSVTLDRFKKFGKSAFIHAGNNFNYYNASKTPNLHYQPHHTEKPKSIHLHTEQKQKKKHKSKGKTKTMIAAVSSASGLVLVVLCVWALLCYRKKRQLAKRNKWAISKPMIPLTIKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLMAATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVSTFVDLSHFKHPNLLPLSGYCIAGGRRSWCCTSLCQTGI. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04952 486 Pfam Protein tyrosine and serine/threonine kinase 408 485 IPR001245 GO:0004672|GO:0006468
Seca5g04952 486 SUPERFAMILY L domain-like 57 241 - -
Seca5g04952 486 FunFam Putative LRR receptor-like serine/threonine-protein kinase 366 476 - -
Seca5g04952 486 SUPERFAMILY Protein kinase-like (PK-like) 382 483 IPR011009 -
Seca5g04952 486 PRINTS Leucine-rich repeat signature 201 214 - -
Seca5g04952 486 PRINTS Leucine-rich repeat signature 158 171 - -
Seca5g04952 486 Gene3D Ribonuclease Inhibitor 127 313 IPR032675 -
Seca5g04952 486 Gene3D Ribonuclease Inhibitor 27 126 IPR032675 -
Seca5g04952 486 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Seca5g04952 486 Gene3D Phosphorylase Kinase; domain 1 365 476 - -
Seca5g04952 486 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Seca5g04952 486 SMART LRR_typ_2 201 224 IPR003591 -
Seca5g04952 486 SMART LRR_typ_2 133 154 IPR003591 -
Seca5g04952 486 SMART LRR_typ_2 155 177 IPR003591 -
Seca5g04952 486 SMART LRR_typ_2 81 104 IPR003591 -
Seca5g04952 486 MobiDBLite consensus disorder prediction 277 304 - -
Seca5g04952 486 ProSiteProfiles Leucine-rich repeat profile. 135 156 IPR001611 GO:0005515
Seca5g04952 486 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Seca5g04952 486 MobiDBLite consensus disorder prediction 289 304 - -
Seca5g04952 486 PANTHER OS05G0588300 PROTEIN 10 168 - -
Seca5g04952 486 Pfam Leucine Rich Repeat 83 102 IPR001611 GO:0005515
Seca5g04952 486 Pfam Leucine Rich Repeat 203 222 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04952 Seca-Chr5 106792858 106794962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04952 57 468 Receptor kinase-like Gene Family AT5G07280 26.432 4.74e-31 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca5g04952 PK_Tyr_Ser-Thr 2.3e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04952 - - gmx:100778920 681.789