Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04947 ATGTCCACCTCTGTTATCAATGGAAATGATTCCCTCACTGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGCGTAGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCCTGGAAACTGGGGAGTCAGTGGCCATTAAGAAAGTTTTACAAGACCGAAGATATAAGAATCGTGAACTACAGTTAATGCGTGTGATGGATCATCCAAATGTGGTCTCTTTGAAGCATTGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCGGAGTCCATGTATAGGGTTTTAAAGCACTACAGTAATGCTAATCAAAGAATGCCAATCATCTATGTAAAGCTCTATATGTACCAGATTTTCAGGGGGTTGGCTTATATCCACACCGTTCCTGGCGTTTGCCACAGAGATGTTGATCCTCTTACACACCAAGTTAAGCTGTGTGATTTTGGAAGTGCAAAAATGCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTGGACCAGCTTGTACATATTATAAAGGTGCTTGGAACACCCACTCGGGAGGAAGTACGCTGTATGAACCCCAATTATAATGAGTTTAGGTTTCCACAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAATACTCCCCAAGTCTTCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCTCACCTGCCAAATGGTCGTCCATTACCCCCTCTATTCAACTTCAAACAGGAAGTAAGTTGTTAA 1020 0.4225 MSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRVMDHPNVVSLKHCFFSTTSADELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPGVCHRDVDPLTHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNEFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAHLPNGRPLPPLFNFKQEVSC. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04947 339 SUPERFAMILY Protein kinase-like (PK-like) 33 333 IPR011009 -
Seca5g04947 339 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Seca5g04947 339 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Seca5g04947 339 FunFam Shaggy-related protein kinase kappa 114 339 - -
Seca5g04947 339 CDD STKc_GSK3 29 314 IPR039192 -
Seca5g04947 339 ProSiteProfiles Protein kinase domain profile. 34 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04947 339 Pfam Protein kinase domain 34 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04947 339 Gene3D Transferase(Phosphotransferase) domain 1 114 339 - -
Seca5g04947 339 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Seca5g04947 339 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04947 Seca-Chr5 106748765 106753574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04947 38 322 MAP Kinase Gene Family AT3G59790 35.948 2.00e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca5g04947 Pkinase 5.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04947 K14502 - gmx:100779909 672.544