Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04945 ATGGGCATTTCAAAACCAGTGAATGATACAGGGTCATCTCAGACAGTCAGCAGTCATCGCCATAGGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCTGTGGTGCTGCTTGTCTATTGTTTGCATTGGTACAGATCACGCATCCTCTATACATCTTACGTGGAGCAAGATTGTGAATTTGATATTGGTCATTTGAAGAGGTTTTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAGTCCAAAAAATATCCTAGGACAAGGTGGTTTTGGGGTTGTATACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTGAAGCGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTACGTCTTTATGGATTCTGTATGACACCAGATGAAAGGTTACTCGTTTATCCATACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCCTTGGACTGGAACAGGCGAATGTGTGTTGCTCTTGGGGCTGCACGAGGGCTTTTGTACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTCAAGGCTGCAAACATTTTGTTAGATGAAAGCTTTGAAGCTGTGGTGGGCGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGGGGTACTGTAGGACACATTGCCCCTGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGATCATAACAGGACAAAAGGCACTGGATGCTGGAAACGGTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATTTGAGGAGAAGAGGCTGGAAGTGTTAGTTGATAGGGATTTGAAGGGATGTTTTGATCCAGTAGAGTTAGAAAAAGCAGTGGAGTTGTCTTTACAGTGCACTCAGTCACTTCCTAGTTTGAGACCAAAGATGTCAGAGGTTTTGAAGATTCTAGAAGGTCTGGTTGGGCAGTCAGTGCGGCCAGAAGAGTCACAAGGAGGGGCTAACCTGTACGATGAAAGGACTTGCAGTTTCTCTCAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1224 0.4314 MGISKPVNDTGSSQTVSSHRHRVLSVVIGFSCTFVISVVLLVYCLHWYRSRILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFSPKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMCVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLEIITGQKALDAGNGQVQKGMILDWVRTLFEEKRLEVLVDRDLKGCFDPVELEKAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQSVRPEESQGGANLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04945 407 Gene3D Transferase(Phosphotransferase) domain 1 160 365 - -
Seca5g04945 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Seca5g04945 407 Gene3D Phosphorylase Kinase; domain 1 54 159 - -
Seca5g04945 407 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04945 407 SMART serkin_6 84 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04945 407 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 66 355 - -
Seca5g04945 407 FunFam Somatic embryogenesis receptor-like kinase 1 160 374 - -
Seca5g04945 407 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Seca5g04945 407 Pfam Protein kinase domain 87 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04945 407 FunFam Somatic embryogenesis receptor kinase 1 54 159 - -
Seca5g04945 407 SUPERFAMILY Protein kinase-like (PK-like) 67 357 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04945 Seca-Chr5 106742755 106745082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04945 4 407 Receptor kinase-like Gene Family AT5G45780 72.906 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca5g04945 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04945 - - ccaj:109812711 771.541