Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04944 ATGGATCAAGCAGGAATCAAAGGCAGAGGTGAGGTATTGCATCCTGTTCTTGAAGGGGTAGATGAGAATTTAAGCCCTTTGGTTGAAAGGGTTGCAATTGATGCAGTAGATAGGAGTAGCTTGGTTGACAGGCCTAGTATGATTGGGGAAGTTGGAACCTCAGGAGAGGTGGGTAAGGATTCGGGATCCAATAAGGAGCTAAAGGAGGAGCCTGAGGATGTTAAGGGTCATGACAAGTGTGATCAAGAAAATATATGTGATAAATTGCCTGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAATCAGGAAGTGCTTGAGACTGTGGTGGTAATAGAGCCTGTTCAGACTGAATACATCAATGGAGATAACAGGAAATTGGAAGCAAAAGCTAATGAATCAGAGTTGAGCTTGGCATCCATGAAAACAACAAAAGGGGTGTCTGAAACAGATAAAAATTCATGTGTGATTGATATAAAGTGCAGCAAAGGGTTTTATGAGAATTCAGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCAGATGAAACAGCAGTGGATACTGCTAATAGTGCTACAAGCACAGATTTGATTCAGCTTGGTTGCGCGTGTAAGGATGAGCTGGGCATTGCACACCTTCATTGTGCTGAAGCATGGTTCAAGGTTAAGGGAAACAGGGTTATGTGA 711 0.4219 MDQAGIKGRGEVLHPVLEGVDENLSPLVERVAIDAVDRSSLVDRPSMIGEVGTSGEVGKDSGSNKELKEEPEDVKGHDKCDQENICDKLPGVDQGTSYNSNNLVNQEVLETVVVIEPVQTEYINGDNRKLEAKANESELSLASMKTTKGVSETDKNSCVIDIKCSKGFYENSEGERICRICHLTSGQSSDETAVDTANSATSTDLIQLGCACKDELGIAHLHCAEAWFKVKGNRVM. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04944 236 Coils Coil 127 147 - -
Seca5g04944 236 ProSiteProfiles Zinc finger RING-CH-type profile. 170 236 IPR011016 GO:0008270
Seca5g04944 236 SUPERFAMILY RING/U-box 172 233 - -
Seca5g04944 236 PANTHER ZINC FINGER, RING-CH-TYPE 60 235 - -
Seca5g04944 236 SMART ringv_2 177 234 IPR011016 GO:0008270
Seca5g04944 236 MobiDBLite consensus disorder prediction 61 81 - -
Seca5g04944 236 MobiDBLite consensus disorder prediction 46 81 - -
Seca5g04944 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 235 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04944 Seca-Chr5 106729814 106731859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04944 153 235 C3H Transcription Factor Family AT5G05830 39.080 1.67e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04944 - - gmx:102668208 317.39