Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04935 ATGGTAGCAGCTACTGATGGAGTCCGTAGCAGAAAGAAGTCATCAAGAGGACACCACAGGTTTGTAGGTGTTCGTCAAAGACCATCAGGGAGATGGGTGGCAGAGATTAAGGATTCTATACAAAAGGTTAGGCTTTGGCTTGGAACATTTGACACTGCTGAGGATGCAGCTCGTGCATATGACACTGCTGCTCGAGCTTTGAGAGGTGCCAATGCTCGGACCAACTTTGAATTGCCAGAGTCTGCTACCACTGGTGGTGGTGCTTCTAAGCGTGGTGGTGGTGGTTCCAACTTCATGATTGATAATACTGAGCCTTTTTCTTTTGAGGATGTGAGTGAGTCAGGGGCAGATGCAAATGACCTTCTTGGTGCACTCAAGGCCAAACTGTTTGATAGAAAAGAAGGAAAGGTTTCAATTCCATTCCCTGCTAATTGTGTTCAATCTGGCTTGGTTCCAAGATCAACTCAAAACTGTTCTGGGAGGAAGGAGTTATCATCAGCTACTTCCCTCTCTCAGATGAATGTAACTGCCAACACCATGCCTGCTTTGTTGAGTCCTTCATCAAACACTTCTGCTAAGAGTGTGCTTATCCCAAATCATGATGATCATGAAGGTGCTGTGGTAAGCAGTGTTGGAGTCAACTCTCATCAACTTTGTCAAACCCCACCTGTGACAAGCATGGGATGGTCCAATGAAATAGCACATGAATTGCCTTGGCCTATGCAGATGAGCCAATTTCCTGACAATAGCCTACTTGCCTCTGCCAGTGCAACCATCTTTCCATGGCCACTTTCTGGGGTAATTGAGTCCACTGTTGATATGACATGTACAGATCAGGGGCCATCAAATAGCAACAGGAGTGGCCAAACAAATATGGTGAGCATGCAATTACCTTTAGCTGGTGGAGCAACTGAAGGCTTTTGGACATTGGACCAGCAACAATTTGTGCAATGTGAGAACAACAGTTGGTTTAATTCTAGTGCCTCTTGGGATCCTCTCCTCTATGTACCATCTGAGCTAGCTTGA 1026 0.4581 MVAATDGVRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSIQKVRLWLGTFDTAEDAARAYDTAARALRGANARTNFELPESATTGGGASKRGGGGSNFMIDNTEPFSFEDVSESGADANDLLGALKAKLFDRKEGKVSIPFPANCVQSGLVPRSTQNCSGRKELSSATSLSQMNVTANTMPALLSPSSNTSAKSVLIPNHDDHEGAVVSSVGVNSHQLCQTPPVTSMGWSNEIAHELPWPMQMSQFPDNSLLASASATIFPWPLSGVIESTVDMTCTDQGPSNSNRSGQTNMVSMQLPLAGGATEGFWTLDQQQFVQCENNSWFNSSASWDPLLYVPSELA. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04935 341 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Seca5g04935 341 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 219 - -
Seca5g04935 341 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Seca5g04935 341 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Seca5g04935 341 MobiDBLite consensus disorder prediction 76 98 - -
Seca5g04935 341 FunFam ethylene-responsive transcription factor RAP2-11 19 78 - -
Seca5g04935 341 MobiDBLite consensus disorder prediction 1 23 - -
Seca5g04935 341 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Seca5g04935 341 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Seca5g04935 341 SUPERFAMILY DNA-binding domain 21 77 IPR016177 GO:0003677
Seca5g04935 341 CDD AP2 20 77 IPR001471 GO:0003700|GO:0006355
Seca5g04935 341 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04935 Seca-Chr5 106672381 106673406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04935 9 76 AP2-EREBP Transcription Factor Family AT5G19790 67.647 4.18e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g04935 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04935 - - gmx:102661478 418.698