Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04922 ATGGCTTCAGGGGCAATTTTTTCGTCTTTGCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTCGCCCCAGTTGATTTGAGCGACGTCGCTTTGATACAGACCCTTGTATCGGTGGCCAACGAGCTTGTGTCGTGCTTTTCCAAGTGTCCGTTCTTCTTTCAGCGCAAGAACTCGCGGTCTTTGATCCGGAAAGTGGAGGTTTTTCAGCTGCTTCTGGAGTATTTGAAGGATTCTGGTTGTGGTGCGTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTACCTGCTGATGTACCGGTCCAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAAAACCATTCTATTTCCGGTCACTTCCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTTCCGGTTAAGGATATTGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGTTGTTGCAGAAGCAGTCAAGGAGGGCTAAGTTGTTTATAGACATGAAGGATGATGCTCTTAGGATCCGCTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGCGGATTCCTGATTCAGCTGAATTGCGATCTTTCTATGTAGAGAAGTTGCAGATTCTGGATGCTGCAAGTTGTAGAGATGAAATTGATGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTACGATTTCTGTGCTTAAAGGGTTGGTGGCCATGACTCGTTATTGCAGGTTTTTGCTTTTTGGCTTTGAGGAAGATGAGCATGACTTGGAAAATGGAGGTCAGAAGAAGCCTAAGAAGAGATTGATTACTCAGGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGCTGCCCTATATCATTGGATGTGATGAGAGACCCGGTGATAATTTCCACAGGTCAAACTTATGATAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCATACAACTTGCCCAAAAACAGGACAAATGCTTGCCCATAATCGTCTTGTTCCTAATCGTGCTCTAAGGAATTTGATTGTGCAGTGGTGTGCTGCTCATGGAGTTCCCCTTGACCCACCAGAGGTCATGGATCCTATGGGTGAATCCTTTGCATCTGCTTGTCCAACCAATGCTGCCCTTGAAGCCAACAGAGGCACTGCAGCACTTCTCATTCAACAGCTAGCGAATGGGTCACAATCTGGAAAGACTATAGCGGCCCGTGAGATACGATTGCTAGCAAAAACTGGCAAAGAAAACCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCTCATCTTAGGAACTTGCTTTCATCACCAAATGCTGTTGCTCAGGAGAATTCAGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAGAGTCGAATCATGGATGAGGATGGGTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAAATAATCGCAGATAAGACGGGAGCTGTTGAAGCACTAGCAGGGCTCTTGCAAGAGGGAACTCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGAAGCAGGGGCAGTATCAGCTCTTGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTGGCCTTGATAGTTCGACAGCCAGTTGGGGCCAAAGCAGTAGTGAATGAGGAAGAAGCAGTAGCTGGATTGATAGGAATGATGCGTTGTGGAACACCAAGAGGCAAAGAGAATGCAGTTGCAGCATTGCTTGAGTTGTGCCGGAGTGGAGGAGCTGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGTTTACTTCAAACCCTGCTTTTCACAGGGACAAAGCGAGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCTAGCAATTCAGCTCAAAATAGGGATACAAGCTTTGCCGGTGATGTTTCAGTACCAATGTCCATTTCTGTCCCTGTGTTATAG 2154 0.4564 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALIQTLVSVANELVSCFSKCPFFFQRKNSRSLIRKVEVFQLLLEYLKDSGCGACLPPTAVLCLKELYLLMYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDIGLSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRIPDSAELRSFYVEKLQILDAASCRDEIDALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLLFGFEEDEHDLENGGQKKPKKRLITQEIAETFLTVPKDFCCPISLDVMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCAAHGVPLDPPEVMDPMGESFASACPTNAALEANRGTAALLIQQLANGSQSGKTIAAREIRLLAKTGKENRAFIAEAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEDGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKTGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVSALVGALGNEGVAEEAAGALALIVRQPVGAKAVVNEEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQNRDTSFAGDVSVPMSISVPVL. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04922 717 Gene3D - 551 679 IPR011989 -
Seca5g04922 717 FunFam RING-type E3 ubiquitin transferase 289 364 - -
Seca5g04922 717 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Seca5g04922 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
Seca5g04922 717 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Seca5g04922 717 Coils Coil 214 234 - -
Seca5g04922 717 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Seca5g04922 717 Gene3D - 376 550 IPR011989 -
Seca5g04922 717 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Seca5g04922 717 CDD RING-Ubox_PUB 291 343 IPR045210 -
Seca5g04922 717 SMART arm_5 423 463 IPR000225 GO:0005515
Seca5g04922 717 SMART arm_5 508 548 IPR000225 GO:0005515
Seca5g04922 717 SMART arm_5 589 629 IPR000225 GO:0005515
Seca5g04922 717 SMART arm_5 549 587 IPR000225 GO:0005515
Seca5g04922 717 SMART arm_5 464 506 IPR000225 GO:0005515
Seca5g04922 717 FunFam RING-type E3 ubiquitin transferase 366 688 - -
Seca5g04922 717 SUPERFAMILY ARM repeat 381 671 IPR016024 -
Seca5g04922 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Seca5g04922 717 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Seca5g04922 717 SUPERFAMILY RING/U-box 279 363 - -
Seca5g04922 717 PANTHER U BOX DOMAIN-CONTAINING 61 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04922 Seca-Chr5 106542262 106544415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04922 1 717 U-box Gene Family AT1G29340 70.476 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04922 - - gmx:100811153 1240.71