Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04920 ATGGAGGAAGCTCAGGGTAGTTCCAATTCCCTGCCTCCTTTCCTCGCCAAGACTTATGAGATGGTGGATGATCCTTCCACTAATAGCATTGTTTCATGGAGTACCTCCAACAAGAGTTTCATTGTTTGGAATCCACCTGAATTTGCAAGGGATTTGTTGCCTAAATTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGACAGCTCAACACTTATGGATTTCTATTTGATCAGGGCTTTAGAAAGATTGACCCTGAACAATGGGAATTTGCAAATGAGGATTTTGTTAGAGGTCAACCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAGAATCTCCAAGGGGCTGGTCCACTACCAGAATCTGAACGGCAGAGTTTGAAAGGTGAGATAGAGAAGCTTAAACATGATAAAGAACAACTTCTTCTGGAGTTACAGAAACATGAACAGGAGTGGAATATGTATGAGATACAATTACATTGCTCAAAGGATCGATTGGAAAAGTTGGAAATGAAGCAACAAAGTATGCTCTCTTCTGTTTCTCAAGCGCTGCAGAAACCTGGGATTGCCTTAAATCTCTGGCCACTAACAGAAAACATGGATAGGAAACGAAGGTTGCCGAGAAGTGGTCATTTAAGTGATGAAGCTAGTATTGAAGATCCTATGGAAACTTCTCAAGTGTTACCTGGAGAAAATGCTGAGAGTACCTCTATTTTCACATCAAACATGGAGCGATTGGATCAGCTTGAGTCATCCATGACGTTTTGGGAGAATATTATTCATGATGTTGGTGACATCTCTCTTCAAAGTCATTCAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTCGAAATTCAGCCTAAGTCACCTGGAATCGACATGAACTCTGAACCAGCTGTAGCTGCTATTCCTGATCCTGTTGCATCAAAAGAACAACCTGTAGGAACTGCCCCTGTGACTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAAAATCCTGGTTCCCATGAAACACAGGAAGCACATTCAGAAAGAAAGGATTCTAATGGCAGAAGTAATGAAGGAAAACCTGGTGACCATGGCAGATTTTGGTGGAATATCAGGAATGTAAATAATCTTCCAGAACAGATGGGGCATTCTTAA 1209 0.4053 MEEAQGSSNSLPPFLAKTYEMVDDPSTNSIVSWSTSNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFLFDQGFRKIDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNLQGAGPLPESERQSLKGEIEKLKHDKEQLLLELQKHEQEWNMYEIQLHCSKDRLEKLEMKQQSMLSSVSQALQKPGIALNLWPLTENMDRKRRLPRSGHLSDEASIEDPMETSQVLPGENAESTSIFTSNMERLDQLESSMTFWENIIHDVGDISLQSHSNLDFDESTSCADSPAISCVQLDVEIQPKSPGIDMNSEPAVAAIPDPVASKEQPVGTAPVTTGVNDVFWEQFLTENPGSHETQEAHSERKDSNGRSNEGKPGDHGRFWWNIRNVNNLPEQMGHS. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04920 402 SMART hsfneu3 10 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g04920 402 MobiDBLite consensus disorder prediction 359 380 - -
Seca5g04920 402 MobiDBLite consensus disorder prediction 353 385 - -
Seca5g04920 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 109 IPR036390 -
Seca5g04920 402 Coils Coil 131 165 - -
Seca5g04920 402 FunFam Heat shock transcription factor 1 7 110 - -
Seca5g04920 402 Pfam HSF-type DNA-binding 14 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g04920 402 MobiDBLite consensus disorder prediction 113 133 - -
Seca5g04920 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 284 IPR027725 -
Seca5g04920 402 MobiDBLite consensus disorder prediction 212 239 - -
Seca5g04920 402 Gene3D - 6 110 IPR036388 -
Seca5g04920 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g04920 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca5g04920 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04920 Seca-Chr5 106530234 106531842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04920 7 401 HSF AT4G18880 54.054 3.17e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca5g04920 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04920 K09419 - gmx:100798004 617.461