Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04912 ATGGCTGATAATACACCAAGCAATGGAAACCATCAAGTGGTTTTAAATGTAAACGGTGATGACTCAGGAATTGAAGACTGTGTGCCTCTTTTACAGAAGTTGGTAGCAGAGGTGGTGGGCACATACTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAACCTTGGCAATGAAAAGGTGGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTTGCTGTTATGGTATTGGCTTACTCTCTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCAGTCACCATTGCTCATGCTTCCACAAGAAGGTTTCCCTTGAAGCAGGTACCAGCTTATATAATAGCTCAGGTCCTTGGATCCACACTTGCAAGTGGAACTCTTAGACTTATATTCAATGGCAAGGAGAACCATTTTTCAGGAACACTCCCGGCTGAGGTGGTGGGCACGTACTTGTTGATATTTACAGGCTGTGCTTCGGTGGTGGTGAATCTTAACAATGAAAAGGTGGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTATTGGCTTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAACCCAGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCCTTCAAACAGGTACCAGCTTATATAGTAGCTCAGGTCTTAGGATCCACACTCGCAAGTGGAACTCTTAGACTTATATTCAGTGGCAAAGAAAACCATTTTGCAGGAACACTCCCCGCTGGTTCTGACCTGCAAGCTTTTGTGGTTGAATTCATAATCACTTTCTACCTTATGTTTGTCGTTTCTGGAGTAGCCACCGATAACAGAGCGATTGGTGAATTGGCTGGGCTTGCAGTTGGGTCTACGGTGCTGCTAAATGTGTTGTTTGCCGGGCCAATCACTGGAGCATCAATGAACCCAGCAAGAAGTTTAGGCCCCGCAATTGTGCACCATGAGTACAGAGGAATATGGATATACATAGTATCACCCATTTTGGGAGCTTTGGCAGGTACATGGGCCTACAGTTTCATAAGGTATACCAACAAGCCAGTTCGTGAACTCACCAAGAGTGCATCTTTCCTCAAAGGAAAGGGATGTGAATGA 1119 0.4549 MADNTPSNGNHQVVLNVNGDDSGIEDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLGNEKVVTLPGISIVWGLAVMVLAYSLGHISGAHFNPAVTIAHASTRRFPLKQVPAYIIAQVLGSTLASGTLRLIFNGKENHFSGTLPAEVVGTYLLIFTGCASVVVNLNNEKVVTLPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPFKQVPAYIVAQVLGSTLASGTLRLIFSGKENHFAGTLPAGSDLQAFVVEFIITFYLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYIVSPILGALAGTWAYSFIRYTNKPVRELTKSASFLKGKGCE. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04912 372 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Seca5g04912 372 NCBIfam MIP family channel protein 144 346 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 CDD MIP 144 349 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 SUPERFAMILY Aquaporin-like 30 141 IPR023271 -
Seca5g04912 372 Gene3D Glycerol uptake facilitator protein. 28 138 IPR023271 -
Seca5g04912 372 Pfam Major intrinsic protein 137 346 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 Pfam Major intrinsic protein 29 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 ProSitePatterns MIP family signature. 197 205 IPR022357 -
Seca5g04912 372 PANTHER AQUAPORIN NIP2-1 141 365 IPR034294 -
Seca5g04912 372 SUPERFAMILY Aquaporin-like 139 360 IPR023271 -
Seca5g04912 372 Gene3D Glycerol uptake facilitator protein. 139 361 IPR023271 -
Seca5g04912 372 PRINTS Major intrinsic protein family signature 140 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 PRINTS Major intrinsic protein family signature 329 349 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 PRINTS Major intrinsic protein family signature 292 314 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 PRINTS Major intrinsic protein family signature 261 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 PRINTS Major intrinsic protein family signature 179 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca5g04912 372 PRINTS Major intrinsic protein family signature 216 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04912 Seca-Chr5 106441773 106449903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04912 142 367 Major Intrinsic Protein MIP AT5G37820 62.832 7.83e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04912 K09874 - gmx:100812577 410.609