Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g04907 ATGACGATTGTTAACTTATTTGCCATCCTACTCATTGCACTAAGTTGCTTCCATTTGCTGAGAGTTTCCGCAGCAAAATTACCCCAACAAGAAGTTGATGCTCTTGGAGAAATTGTCAGTACAATGGGTGCAACCTATTGGAAATTTGATGCTGATTCCTGCAATATTGAAATGGTTGGACTAACGCAAGAACCACCTGCTGAATCAGAGAGAAGCATTCTTTGTGACTGCAGCTTTGAAAACAATAATGTCTGTCATGTTGTGAAGATGACCCTCAAGCGCCTTAGTCTTCCTGGCAGACTCCCACCTCAACTGGCTAAGCTACCTTTTCTCCAAGAAGTAGATTTTGCTTACAATTGCTTCATTGGAACAATTCCGAATGAATGGGCTTCAATGAAATTAACTTCAATCTCTCTTCTTGTGAATCGCTTATCGGGGGAAATTCCTAAGCATCTAGGAAACATTACTACTCTCACATACCTGATGCTTGAAGCAAACCAATTTTCTGGGGCCGTTCCGCCTGATCTTGGGAGGCTGATCAACTTGCAGACCTTGGTGCTGTCATCCAATCAGCTAACTGGGAACTTACCACTGACACTTGCTGGATTACGAAATTTGACTGACTTTAGGATAAATAATAACAATTTTACTGGAACAATACCAAATTTCATACAGAACTGGCAACTTCTCCAAAGACTAGAAATGCATGCAAGTGGATTAGAGGGACCCATTCCATCCAATATATCTCTCTTGAAGAACTTAGTTCAGCTCACATATTTATACAGAAGAATCAGTGATATAAAAAGTCCTGGCCAAGATTTTCCTTTTCTGGGGAACATGGCAGCCCTGACTACGTTGGTTTTAAGGAACTGTAACCTGTCTGGCGTGATACCTTCATACATCTGGAACATGGTGAATTTGGCGGTTTTGGATGTCAGCTTTAACAAGCTAGTTGGGGAAATTCCAGCAAATATGAATATAAGGCGTCTAAGATTTATCTACCTAACAGGTAATATGCTTAGTGGAAACATACCGCAATCAATCTTGAGGGATGGAAGTAGCATTGATCTTTCCTACAACAATTTTACTTGGCAAGACCCTGAGCAACCTGCTTGTCAGGACAACATGAACTTAAATCTGAATTTGTTAAGAAGCTCGCAGAAGGAGAACAAGTTAGAGGAATATGTTCCTTGCTCGAAGAATTTCAGGTGTCCACGGTATTCAAGTTGTTTACATGTTAATTGTGGCGGGAAGGATGTAAATGTAAAAGATGACAAAGGAGAAAACCTTTATGTGGGAGATGGACATGTTCCAGGTGGCACTGCAACCTATTTCTATAGTGATACTGATAACTGGGGATTTTGTAGCACTGGAGACTTCATGGATGATTTTGAGTCCCAGAACATACGTTACACTGCATCTCTTCCATCATCAAATATGCCTGAATTATATACAACAGCACGTTTATCTCCAATTTCACTTACTTATTTCCATAATTGCATGGAAAATGGGAACTATACTGTACATCTTCACTTTGCTGAAATACAGTTTACAAATGATAATACATATAGAAGACTTGGGGAGCGCATCTTTGATATCTATGTTCAGGATAAACTGATTCGGAAGAATTTTAATATAGAAAATGAAACAAAAGTTGCTGAAAAAACACTGGTACTGCCTATATATAATATCAGCGTCACAGATAATATCTTGGAGATTCGATTCTACTGGGCTGGCAAAGGAACTACTAGAATTCCTGATGTTGGAGTTTATGGTCCCCTTGTATCAGCATTGTCTGTTGTTTCTGATTCTAAACCTTGCTCAAATGGAGGAAAGACATTTGCTGTTTCCAAAATCATTGCAATTGTAGCTGGGGCTCTATGCTTAGTGCTTTTTATTTCTGGATTCATTTGGTGGAAAGGCTTTTGCAGTCGAAAATTGCAAAGGAAAGATACGAAAAATGGAGATATTCAGGCAGGTAATTTTACTTTGGAGCAGATCAGAGCTGCCACAGATAACTTCTCTTCTGATAATAAGATTGGGGAAGGCGGTTTTGGCCCTGTATTCAAGGGTCAATTGACTGATGGTACTTTTATAGCAGTCAAACAACTATCATCAAAATCACGGCAGGGAAATCGTGAATTCATAAATGAAATAGGCTTGATATCTTGTTTGCAACACCCCAACCTTGTAAAGCTTCATGGATCTTGTACTGAAGGGGAACAACTTTTGTTGATATATGAGTACATGGAAAATAACAGCCTTGCCCAAGCTTTATTTGGTAGTGAAAACAAACAGCTTAAAATGGAATGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCAAAAGGTTTAGCATTTCTCCATGAAGAGTCAAGATTCAAGATAGTTCACAGAGATATCAAGGCTTCTAACGTGTTACTCGACAAGGAATTAAATCCAAAAATATCTGACTTTGGCTTGGCTAAACTTGATGAAGTGGAGAAGACACATATCAGCACCCGAGTCGCTGGGACAATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACACACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGCCTTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGTTTGTCTTTTGGATTGGGCATGTAAGTTGCACGAAACTCAAAACTTAGTGAATCTGATTGATGAAAGGTTGGGGCCAGATTTTAATATAATGGAAGCAGAAAAGGTTGTCAAAGTAGCTCTCCTGTGCACAAATGCTTCTCCATCACTTAGGCCTACAATGTCTGAGGTGGTGAATATGCTTGAAGGACAAGCAGTTATTTCTGATTCTATCCCGGAATCAAGTACCTACAATGAGGATTTAAGGTTTAAAGCCTTAAGAGACTTCCATCAACATCGGTCAAGCCAGAGTTTGAGCGGAAACCAGAGCCAATATTCAATGACAGTGCATACATTCAGCTCAACATCTGGTGGTAATACTTCCACAAGTTATATTGAGGATCATCCCTTAGTTGACAATAGTTAG 3057 0.3945 MTIVNLFAILLIALSCFHLLRVSAAKLPQQEVDALGEIVSTMGATYWKFDADSCNIEMVGLTQEPPAESERSILCDCSFENNNVCHVVKMTLKRLSLPGRLPPQLAKLPFLQEVDFAYNCFIGTIPNEWASMKLTSISLLVNRLSGEIPKHLGNITTLTYLMLEANQFSGAVPPDLGRLINLQTLVLSSNQLTGNLPLTLAGLRNLTDFRINNNNFTGTIPNFIQNWQLLQRLEMHASGLEGPIPSNISLLKNLVQLTYLYRRISDIKSPGQDFPFLGNMAALTTLVLRNCNLSGVIPSYIWNMVNLAVLDVSFNKLVGEIPANMNIRRLRFIYLTGNMLSGNIPQSILRDGSSIDLSYNNFTWQDPEQPACQDNMNLNLNLLRSSQKENKLEEYVPCSKNFRCPRYSSCLHVNCGGKDVNVKDDKGENLYVGDGHVPGGTATYFYSDTDNWGFCSTGDFMDDFESQNIRYTASLPSSNMPELYTTARLSPISLTYFHNCMENGNYTVHLHFAEIQFTNDNTYRRLGERIFDIYVQDKLIRKNFNIENETKVAEKTLVLPIYNISVTDNILEIRFYWAGKGTTRIPDVGVYGPLVSALSVVSDSKPCSNGGKTFAVSKIIAIVAGALCLVLFISGFIWWKGFCSRKLQRKDTKNGDIQAGNFTLEQIRAATDNFSSDNKIGEGGFGPVFKGQLTDGTFIAVKQLSSKSRQGNREFINEIGLISCLQHPNLVKLHGSCTEGEQLLLIYEYMENNSLAQALFGSENKQLKMEWPTRFRICIGIAKGLAFLHEESRFKIVHRDIKASNVLLDKELNPKISDFGLAKLDEVEKTHISTRVAGTIGYMAPEYALWGYLTHKADVYSFGVVALEIVSGKSNNNYLPDDGSVCLLDWACKLHETQNLVNLIDERLGPDFNIMEAEKVVKVALLCTNASPSLRPTMSEVVNMLEGQAVISDSIPESSTYNEDLRFKALRDFHQHRSSQSLSGNQSQYSMTVHTFSSTSGGNTSTSYIEDHPLVDNS. 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g04907 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Seca5g04907 1018 Gene3D Ribonuclease Inhibitor 196 267 IPR032675 -
Seca5g04907 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 268 - -
Seca5g04907 1018 Pfam Protein tyrosine and serine/threonine kinase 677 945 IPR001245 GO:0004672|GO:0006468
Seca5g04907 1018 MobiDBLite consensus disorder prediction 994 1018 - -
Seca5g04907 1018 Gene3D Ribonuclease Inhibitor 268 391 IPR032675 -
Seca5g04907 1018 Gene3D Ribonuclease Inhibitor 44 195 IPR032675 -
Seca5g04907 1018 Gene3D - 408 605 - -
Seca5g04907 1018 Pfam Malectin domain 410 598 IPR021720 -
Seca5g04907 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 749 - -
Seca5g04907 1018 ProSiteProfiles Protein kinase domain profile. 674 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04907 1018 Gene3D Phosphorylase Kinase; domain 1 641 749 - -
Seca5g04907 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 603 - -
Seca5g04907 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 981 - -
Seca5g04907 1018 Gene3D Transferase(Phosphotransferase) domain 1 750 957 - -
Seca5g04907 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 270 391 - -
Seca5g04907 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 957 - -
Seca5g04907 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Seca5g04907 1018 SUPERFAMILY L domain-like 83 368 - -
Seca5g04907 1018 SMART serkin_6 674 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g04907 1018 CDD STKc_IRAK 680 947 - -
Seca5g04907 1018 SUPERFAMILY Protein kinase-like (PK-like) 659 946 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g04907 Seca-Chr5 106397139 106408027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g04907 4 840 Receptor kinase-like Gene Family AT1G29750 60.621 0.0 1043
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g04907 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g04907 - - zju:107412400 1382.85